Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02489 ATGGCTTGTGCGCACTACTACCATTGCGCCGCGAGTCTGATATTCCGGTCCGACGCTCGAGCTCGTTTGGGTCATACTTTGACGCTAGAGAGTCCTCAAAGCTCGTGGCTTGGAACTGAACTTAGGGTTTCACCATGCACTCTCAATCTCAGAAATTACGTGTCTGTTACCCGACGCCGGCCCCTAACCGCCACCGTTAGCCTCCCCACAGAAAAACCAGAACGTGCTTCTCCAGGTCAAAAATTTCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCTAGGAAACTTAAGTATCCTACTACCGGAACTGAAGCTCTTCTCATGGGGGTTCTCATCGAGGGTACTAATCTAGCTGCCAAGTTTTTGCGAGCCAATGGAATTACACTTCTCAAGGTTCAAGATGAAACAGTGAAGTTACTTGGAAAAGGTGATTTGTTTTTCTTCAGTCCGGAGCATCCTCCACTGACCGATGAGGCTCAGAGAGCTCTTGATTGGGCTGTTGATCGAAAAATAAAATCTGGCGATGGCGGGGAATTGACCACAGCGCACATACTTCTTGGTGTCTGGTCCGAAGTGGGCTCTCCTGGTCACAAAATTCTGTCCACCCTCGGCTTTAATGATGAAAAAGCTGGAGAGCTTGAGTCCTTAATTTCTAAACCTGGATGTATGGATGATTGA 699 0.4764 MACAHYYHCAASLIFRSDARARLGHTLTLESPQSSWLGTELRVSPCTLNLRNYVSVTRRRPLTATVSLPTEKPERASPGQKFPKWSSKAIKSFAMSELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRANGITLLKVQDETVKLLGKGDLFFFSPEHPPLTDEAQRALDWAVDRKIKSGDGGELTTAHILLGVWSEVGSPGHKILSTLGFNDEKAGELESLISKPGCMDD 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02489 232 ProSiteProfiles Clp repeat (R) domain profile. 82 227 IPR004176 -
Viun2g02489 232 Gene3D - 84 232 IPR036628 -
Viun2g02489 232 Pfam Clp amino terminal domain, pathogenicity island component 98 148 IPR004176 -
Viun2g02489 232 Pfam Clp amino terminal domain, pathogenicity island component 185 224 IPR004176 -
Viun2g02489 232 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 20 232 IPR044217 -
Viun2g02489 232 SUPERFAMILY Double Clp-N motif 84 216 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02489 Viun-Chr2 31322937 31327232 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02489 - - gmx:100527844 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02489 2 31322937 31327232 Viun2g02489 2 31322937 31327232 ECH