Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02336 ATGGGTTGTTTCCACTCCAAAGTAAGGGAAATTCCCATGGAAGATCCCGTTGCTCTTGCGTCAGAGACAGCTTTTAGTGTCAGTGATGTTGAAGCACTTTATGAGCTGTTTAAGAACATTAGTAAGTCTGTCATTGATGATGGTCTAATAAGCAAGGAGGAATTTCAACTAGCAATTTTTAACAAGAAGAAAAAGGAAAACCTCTTTGCGAGTCGGATCTTTGATCTATTTGATGTAAAGAAGAAAGGAGTGATTGACTTTGGTGATTTTGTAAGAGCACTCAATGTTTTTCACCCATCTACACCAATTGAAGTCAAAATAGCATTTTCGTTTAAGTTGTACGATTTAGATAACACAGGATTCATAGAGCGTCACGAGGTCAAGCAAATGATAAATGCACTTCTATGTGAAGCAGAAATTAAGTTGCCAGAGGAAATGATAGAAATGATTATTAACAAGACTTTCATGGATGCTGACCCTAATCAAGATGGGAAAATAGACAAATATGAGTGGAAAAACTTCGTTTATGAAAACCCTTCATTGTTGAAAGTTATGACGTTACCTTTCTTGAGGGACGTGACAACTGCTTTTCCAAGTTTTGTGTTTCATTCAAAGGTGGAGGATGAAATCGCAGAATGA 639 0.3693 MGCFHSKVREIPMEDPVALASETAFSVSDVEALYELFKNISKSVIDDGLISKEEFQLAIFNKKKKENLFASRIFDLFDVKKKGVIDFGDFVRALNVFHPSTPIEVKIAFSFKLYDLDNTGFIERHEVKQMINALLCEAEIKLPEEMIEMIINKTFMDADPNQDGKIDKYEWKNFVYENPSLLKVMTLPFLRDVTTAFPSFVFHSKVEDEIAE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02336 212 FunFam calcineurin B-like protein 3 15 208 - -
Viun2g02336 212 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Viun2g02336 212 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Viun2g02336 212 PRINTS Recoverin family signature 166 186 - -
Viun2g02336 212 PRINTS Recoverin family signature 120 138 - -
Viun2g02336 212 PRINTS Recoverin family signature 73 94 - -
Viun2g02336 212 SUPERFAMILY EF-hand 20 200 IPR011992 -
Viun2g02336 212 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Viun2g02336 212 Gene3D - 15 209 - -
Viun2g02336 212 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Viun2g02336 212 CDD EFh 106 175 IPR002048 GO:0005509
Viun2g02336 212 Pfam EF-hand domain pair 106 174 IPR002048 GO:0005509
Viun2g02336 212 SMART efh_1 69 97 IPR002048 GO:0005509
Viun2g02336 212 SMART efh_1 150 178 IPR002048 GO:0005509
Viun2g02336 212 SMART efh_1 106 134 IPR002048 GO:0005509
Viun2g02336 212 PANTHER CALCINEURIN B 2 208 IPR045198 GO:0005509|GO:0019722|GO:0019900
Viun2g02336 212 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02336 Viun-Chr2 30635158 30638663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02336 1 211 EF-hand Containing Proteins AT4G17615 71.831 3.69e-111 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02336 K06268 - gmx:100779020 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02336 2 30635158 30638663 Viun2g02336 2 30635158 30638663 ECH
Viun2g02336 2 30635158 30638663 Viun3g04072 3 48352982 48357074 PCT