Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02074 ATGGTCTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGGAGTTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGCCAGTTGGAGGCTGATTTCGGTATCGATTTATCCCACCGCAAGGCATTCATTAGGGAGCAGGTCGACTTGTTCCTCCAGACCGAGCACAACCAACCGCAACAACAACCAGAACAAGACGACGACGTACCAAAAGATGAAGAAGAAGAAGATGCCCCTAATAATCCCGAGCAAAGTGAACCATCCGATTCCAAGGAAGAATCGGAAGAAGACGACGATGAAGAGGAACGAGATAAACCTAAGCATGCCAAAAATGCCAAGAAGAATAAAGGACGATCTAACAAGTTAGGTGATGAGGTAGCAAAGAAAAGAGGTGGTGGATTTTGCAAATTGTGTAGCCTGTCTCCACAACTTCAGGAATTCATGGGAGCTCCAGAAATGGCCAGGACTGAGGTTGTTAAGCAAATATGGGCCTACATTAGGGAGAAAAATTTGCAAGACCCAAATAATAGACGGAATATAATTTGCGATGATCGAATGCGGGCCCTTTTTAATGTCAACTCCATCAACATGTTCCAAATGAATAAAGCGTTGTCGAAGCATATCTGGCCATTGGATTCTGATGATGTTGTCCAGGTGAAGTCCACGCCAAAGGAGAAGCAGAAGAAGCAAGAGAGAGATGATGATTCAGATGAGGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGCAGGGAAATCAGGTTTTCTTGCTCCTCTTCAGCTATCAGATGCCCTTGTAAACTTCCTTGGTACCGGAGAAAGTGAGTTATCAAGAACAGATGTTATAAAAAGAATGTGGGATTACATTAAAGGAAACAACCTTCAGATGCTTACGGTTCTCTTTCCATATCCGGTGACCACACCAACTTTTGAAGATCCTTCTAACAAGAGGCAAATAATATGTGACGAGAAGCTGAAAGAACTCTTTGATGTTGACTCCTTCAACGGCTTCACAGTTACAAAACTGCTGGCACCACATTTTATAAAGACACAGCAGTGA 1068 0.4522 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSHRKAFIREQVDLFLQTEHNQPQQQPEQDDDVPKDEEEEDAPNNPEQSEPSDSKEESEEDDDEEERDKPKHAKNAKKNKGRSNKLGDEVAKKRGGGFCKLCSLSPQLQEFMGAPEMARTEVVKQIWAYIREKNLQDPNNRRNIICDDRMRALFNVNSINMFQMNKALSKHIWPLDSDDVVQVKSTPKEKQKKQERDDDSDEEPKRKEKRQKGAGKSGFLAPLQLSDALVNFLGTGESELSRTDVIKRMWDYIKGNNLQMLTVLFPYPVTTPTFEDPSNKRQIICDEKLKELFDVDSFNGFTVTKLLAPHFIKTQQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02074 355 MobiDBLite consensus disorder prediction 222 253 - -
Viun2g02074 355 ProSiteProfiles SWIB/MDM2 domain profile. 257 352 IPR003121 -
Viun2g02074 355 Pfam DEK C terminal domain 2 55 IPR014876 -
Viun2g02074 355 CDD SWIB-MDM2_like 141 211 - -
Viun2g02074 355 Gene3D SWIB/MDM2 domain 252 355 IPR036885 -
Viun2g02074 355 Pfam SWIB/MDM2 domain 140 211 IPR003121 -
Viun2g02074 355 Pfam SWIB/MDM2 domain 261 298 IPR003121 -
Viun2g02074 355 Pfam SWIB/MDM2 domain 313 350 IPR003121 -
Viun2g02074 355 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Viun2g02074 355 Gene3D - 1 59 - -
Viun2g02074 355 SUPERFAMILY SWIB/MDM2 domain 133 215 IPR036885 -
Viun2g02074 355 ProSiteProfiles SWIB/MDM2 domain profile. 136 213 IPR003121 -
Viun2g02074 355 MobiDBLite consensus disorder prediction 57 129 - -
Viun2g02074 355 CDD SWIB-MDM2_like 262 350 - -
Viun2g02074 355 SUPERFAMILY SWIB/MDM2 domain 255 353 IPR036885 -
Viun2g02074 355 MobiDBLite consensus disorder prediction 222 254 - -
Viun2g02074 355 Gene3D SWIB/MDM2 domain 131 219 IPR036885 -
Viun2g02074 355 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 216 - -
Viun2g02074 355 SMART swib_2 258 355 IPR019835 -
Viun2g02074 355 SMART swib_2 137 216 IPR019835 -
Viun2g02074 355 FunFam Upstream activation factor subunit 131 219 - -
Viun2g02074 355 MobiDBLite consensus disorder prediction 70 85 - -
Viun2g02074 355 SUPERFAMILY DEK C-terminal domain 3 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02074 Viun-Chr2 28960271 28964736 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Viun2g02074 SWIB 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02074 K15223 - gmx:100786835 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02074 2 28960271 28964736 Viun2g02074 2 28960271 28964736 ECH