Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02064 ATGAGTGAGAATGAGAGTAAGAAAAAGCACTTTGTCCTGGTGCATGGTCTTGGCCATGGTGCCTGGTGCTGGTACAAGCTGAAGCCACTTTTGGCATATGATGGCCACAAAGTCACAGTTCTTGACCTTGCAGCTTCAGGCATAGATACACAAAAAATAGAAGACATAACTTTTTCTCAATATTCCAAACCTTTGTTGGATCTTTTGGCGTCTCTTCCTCCTACGGAAACAGTTGTCCTTGTGGGACATAGCTTCGGAGGGATCACCATAGCCCTTGCAATGGATAAATTCCCAGAAAAAGTATCTCTCGGAGTTTTTGTTGCAGCTTTTGCTCCTGATACCCACCACAAACCCTCCTATGTATTAGAAAAGTTGACTAAGAGAGACCCAGCAAATGGATGGATGGACTGCGAGATATCGAATAGTGGAAGCAAAACGACGTTCCTTTTCGGTCCTCAGTTTTTGTCCACTACTCTCTATCAATTCTGCTCCACTGAGGATCTGGAATTGGCCAAGACTTTGATAAGAAAAGGATCACTCTTTGCTGAAGAACTTTCTGAGGCAAAAAATTTCTCCCAAGAGGGTTATGGCTCCGTCTCACGTGCCTATATTGTCTTCAGTGAGGACTTGATAATTCCAAAGGAGTATCAACAATGGATGATCCAAAATGCTGGAATTCATGCTGTGTGGGAGATCAATGGAGCAGATCACATGGCTATGCTTGGAAAAACCAAGGATCTCTGTTCAACTCTTCTCGAGATTGCTCATAAGTATAGAAACTAAAATACTTGTTGTGGCTGAGACATAGCATGCAACAATTACATGAGCAAAGTATGTTTTTGTGCAGCAGAGGGTCATGCTCTGTCTCTACTCCAAAAATGCACCACCGTCACCTCAATACGAGAGGCGCGTCAACTCCACGCCCTCATATTAACTACTACCACAGTCTTCAACTCCCAATCTCCGTTTATGTACAACAACATCCTCTCTATGTATGCGCGGTGTGGTTCACTCACAGACTCTCACCTTATGTTCGACAAAATGCCTCGCAGAACTGTTGTTTCCTACAACGCACTTCTTGCAGCCTATTCTCGAGCATCATCAAACCATGCCATTTCGGCTCTTGAACTGTATATCCAGATGGAAAATAAGGGTCTTAGACCCTCCAGTATGACTTTTACTAGCTTGCTGCAAGCATCTTCCTTGCTTCAACATTGGTGGTTTGGATCATCGCTTCATGCCAAGGGCTTCAAGTTGGGTTTGAATGATATTTGTGTCCAAACTTCTTTACTTAATATGTACTCAACTTGCGGGGATTTGAGCTCAGCTGAATTGGTTTTTGGGGATATGGTTGATAGAGATGATGTTGTTTGGAATTCTCTCATTGTGGGATATCTGAAGAATAATAAGATGGAGGAGGGGTTTTGGCTGTTTATTACTATGATGAGGGTTGGTTTTGTCCCAACCCAGTTCACGTATTGTATGGTTTTGAATGCCTGTAGTCATCTGAAGGATTATCGCTCTGGTAGATTGATTCATGCCCATGTGATTGTTAGGAATGTGCCGGTGGATTTACATTTACAAAATGCTCTTGTAGATATGTACTGCAACGTTGGCAATACGCGAACAGCTTATGAGATTTTAAGTAGAATGGAATGCCCGGATTTAGTTTCTTGGAACTCGATGATTGCTGGGTATTCTGAGAATGAGGATGGAGAGAATGCGATGAATTTGTTTGTTCAATTGCGAGAAATGTGTTTTCCTAAACCAGATGACTATACCTATGCTAGCATTATTTCAGCAACTGGCGCATTCCCATCTTCCAGTTATGGAAAATCTCTTCATGCTGAAGTTATTAAAATGGGATTTGAGAGAAGCATGTTTGTAGGAAGCACTCTAGTGTCTATGTATTTCAAAAATCATGAAAGTGAAGCTGCTCGGCGAGTATTTTATGCAATATCAGTGAAGGATGCTATTCTCTGGACGGAAATGATCACTGGTTATTCTAAAACGACCGATGGAATTAAGGCAATTAGATGCTTTTTCGAAATGGTTCATGAAGGCCACGGGGTTGATGACTATGTTCTCAGTGGAGTTTTAGGTGCATGTGCTGATCTTGCACTTTCAAGACAAGGTGAAATAATTCATTGCTATGCTGTTAAAGTGGGGTATGAGGTTGAAATGTCTGTTTCTGGGAGTCTAATTGATATGTATGCAAAAAATGGTAGCCTTGAAGCTGCATATTTGGTATTTTCCCAAGTTTCAGACCCAGATTTGAAGTGTTGGAACTCCATGCTTGGTGGATATAGTCACCATGGAATGGTCGAGGAGGCACTGAAACTTTTTGAGGAGATTCTCAAACAAGGTCTGGTTCCCGATCAAGTGACATTCTTGTCTTTATTGTCTGGTTGCAGCCACCGTAGGTTGGTTGAGCAAGGAAAATTTCTCTGGAATTATATGAACCGCATTGGCTTGATTCCAGGGCCTAAGCACTACTCTTGCATGGTAAATTTGTTGAGTCGAGCAGCATTACTGGAAGAGGCGGAAGAAATTATCAATAAGTCACCTTATATGGAAGATAATCTAGAACTATGGAGAACTTTGTTAAGTGCTTGTGTTATAAATAAAAATTTTAAAGTGGGAATTCATGCAGCAGAGGAAGTTTTGAGATTGAAAGCAGAAGATGGTCCAACGCTTGTTTTGCTTTCTAATCTTTATGCTGCTGCAAGGAGATGGGATAAAGTTGCAGAAATAAGAAGAAATATGAGGGGATCGATGCTGGAGAAAGATCCAGGGTTGAGTTGGATTGAGGCCAAGAATGACATTCATGTGTTCTCTTCCGGAGATCATTCACACCCTGAGGCTGATGAGGTGCAGGCTGAGTTGCATAGGCTAAAAAGAAATATGATTAGAACAGGAAATGATGGCAGAGAGACATAA 2940 0.4167 MSENESKKKHFVLVHGLGHGAWCWYKLKPLLAYDGHKVTVLDLAASGIDTQKIEDITFSQYSKPLLDLLASLPPTETVVLVGHSFGGITIALAMDKFPEKVSLGVFVAAFAPDTHHKPSYVLEKLTKRDPANGWMDCEISNSGSKTTFLFGPQFLSTTLYQFCSTEDLELAKTLIRKGSLFAEELSEAKNFSQEGYGSVSRAYIVFSEDLIIPKEYQQWMIQNAGIHAVWEINGADHMAMLGKTKDLCSTLLEIAHKYRNXNTCCGXDIACNNYMSKVCFCAAEGHALSLLQKCTTVTSIREARQLHALILTTTTVFNSQSPFMYNNILSMYARCGSLTDSHLMFDKMPRRTVVSYNALLAAYSRASSNHAISALELYIQMENKGLRPSSMTFTSLLQASSLLQHWWFGSSLHAKGFKLGLNDICVQTSLLNMYSTCGDLSSAELVFGDMVDRDDVVWNSLIVGYLKNNKMEEGFWLFITMMRVGFVPTQFTYCMVLNACSHLKDYRSGRLIHAHVIVRNVPVDLHLQNALVDMYCNVGNTRTAYEILSRMECPDLVSWNSMIAGYSENEDGENAMNLFVQLREMCFPKPDDYTYASIISATGAFPSSSYGKSLHAEVIKMGFERSMFVGSTLVSMYFKNHESEAARRVFYAISVKDAILWTEMITGYSKTTDGIKAIRCFFEMVHEGHGVDDYVLSGVLGACADLALSRQGEIIHCYAVKVGYEVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSDPDLKCWNSMLGGYSHHGMVEEALKLFEEILKQGLVPDQVTFLSLLSGCSHRRLVEQGKFLWNYMNRIGLIPGPKHYSCMVNLLSRAALLEEAEEIINKSPYMEDNLELWRTLLSACVINKNFKVGIHAAEEVLRLKAEDGPTLVLLSNLYAAARRWDKVAEIRRNMRGSMLEKDPGLSWIEAKNDIHVFSSGDHSHPEADEVQAELHRLKRNMIRTGNDGRET 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02064 979 NCBIfam pentatricopeptide repeat 456 489 IPR002885 -
Viun2g02064 979 NCBIfam pentatricopeptide repeat 761 793 IPR002885 -
Viun2g02064 979 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 656 974 IPR046960 GO:0003723|GO:0009451
Viun2g02064 979 Gene3D Tetratricopeptide repeat domain 811 978 IPR011990 GO:0005515
Viun2g02064 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Viun2g02064 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 793 827 IPR002885 -
Viun2g02064 979 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 729 955 - -
Viun2g02064 979 FunFam Pentatricopeptide repeat-containing protein At3g50420 508 607 - -
Viun2g02064 979 FunFam (S)-hydroxynitrile lyase 6 259 - -
Viun2g02064 979 Pfam Alpha/beta hydrolase family 11 241 IPR000073 -
Viun2g02064 979 SUPERFAMILY alpha/beta-Hydrolases 5 255 IPR029058 -
Viun2g02064 979 Coils Coil 955 975 - -
Viun2g02064 979 Gene3D alpha/beta hydrolase 3 259 IPR029058 -
Viun2g02064 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Viun2g02064 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 351 IPR002885 -
Viun2g02064 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Viun2g02064 979 Pfam E motif 877 937 IPR046848 -
Viun2g02064 979 FunFam Pentatricopeptide repeat-containing protein At3g50420 410 507 - -
Viun2g02064 979 Gene3D Tetratricopeptide repeat domain 709 810 IPR011990 GO:0005515
Viun2g02064 979 Gene3D Tetratricopeptide repeat domain 414 508 IPR011990 GO:0005515
Viun2g02064 979 Gene3D Tetratricopeptide repeat domain 267 405 IPR011990 GO:0005515
Viun2g02064 979 Gene3D Tetratricopeptide repeat domain 609 708 IPR011990 GO:0005515
Viun2g02064 979 Gene3D Tetratricopeptide repeat domain 509 605 IPR011990 GO:0005515
Viun2g02064 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 388 IPR002885 -
Viun2g02064 979 Pfam PPR repeat 428 453 IPR002885 -
Viun2g02064 979 Pfam PPR repeat 529 552 IPR002885 -
Viun2g02064 979 Pfam PPR repeat 660 688 IPR002885 -
Viun2g02064 979 Pfam PPR repeat 733 752 IPR002885 -
Viun2g02064 979 Pfam PPR repeat 323 351 IPR002885 -
Viun2g02064 979 Pfam PPR repeat family 352 399 IPR002885 -
Viun2g02064 979 Pfam PPR repeat family 757 805 IPR002885 -
Viun2g02064 979 Pfam PPR repeat family 554 601 IPR002885 -
Viun2g02064 979 Pfam PPR repeat family 454 501 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02064 Viun-Chr2 28889361 28900009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02064 289 973 Glycoside Hydrolase AT3G49170 30.329 9.37e-107 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02064 - - vum:124844581 1799.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02064 2 28889361 28900009 Viun3g03763 3 44766246 44767792 PCT
Viun3g03761 3 44729856 44731123 Viun2g02064 2 28889361 28900009 PCT