Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02055 ATGACAGGATTCTCAGAGGAAGGAAGCTCCCATGGAAAAAAGTATGGAAAGTTGAAGAAAGACGAATTCGATGGTTATAACTCTGACAACCATCCAAGAAAAAATAGCCCTGTGACGTTGGAGGCACCTCTTTTGGATCCTCAAATGGCAACAGATCACACTGCTTACGACCCTTCCCTTTCTCCCTTATCGAAATCGCCATGGTCCTCTCACATGAACGAAGGACCGTCGACCTCCAACAACAACGAGGCTCTGATAGGGTCCCTGGTCCGAGAAGAGGGCCACATCTACTCCCTCGCTGCAACGAAGGACTTGTTATACACGGGTTCGGAGAGTAAAAACATTCGCGTGTGGAAGAACCAGAAGGAGTTCACGGGGTTCAAGTGCCACAGCGGGTTGGTGAAAGCGATCGTGATCGCGGGGGAAAAGATCCTCACGGGACACCAAGATGGAAGGATAAGAGTGTGGAAAGTTTCAGGGAAAAACGACCACCAACACAAGCGTGTGGCAACGTTGCCGACGTTAAGAAACTACATAAAATGTTCGGTGAAACCGAGTAATTACGTGGAAGTGAAACGACATCGTAACGTGTTGTGGATCAAACACTACGACGCCATTTCATGCCTGGGCGTGACGGAGGATCATTGTTATATATACTCTGCGTCGTGGGATAGAACTTTCAAAGTGTGGCGAACGTCGAATTTCAAGTGTCTGGAGTCTGTGATAGCCCATGACGATGCTCTCAATGCGCTTGTTGTGGGGTTCGACGATTTGGTTTTCACGGGCTCAGCTGACGGCTCGGTTAAGATTTGGCGGCGGGAGGTTCATGGGAAAGGGACAAAACATTTTTTCACGCACACGTTGTTGAAGCAAGAGTGTGCGGTGACGGCGTTAACGATGAGCGGCGAGGGGAGTCTTTTATACGCTGGTTCTTCCGATGGGTTGGTGAATTTTTGGGTGAGAGAGACAAATTTGGAGCACAGGGGCACATTAAGGGGACACGAGTTGGCGATTTTGTGTTTGGCTGCTGCAGGGAGTTTGGTCTTCACTGGGTCTGCTGACATGTCCATATGCGTGTGGAAGAGGTCACTGAGTAATGAGCACACGTGCCTTAATGTTCTATCGGGCCACTCTGGCCCAGTTAAGTGTCTGGCGGCGGAGAGGGATCTGGAAGGCATGTGCAACGAGCGACGGTGGATTTTGTACAGTGGTAGTTTGGATAAGTCCGTTAAGATGTGGAAGGTCTCCGAGAATGCAACTGCCCTACACAACCCTCAACCACCGAGGCATAGTGTTGATCACTTCCCCATTGTTTCATCATTGAAGAAAGTGGGGTCCAAATTCTAG 1347 0.4959 MTGFSEEGSSHGKKYGKLKKDEFDGYNSDNHPRKNSPVTLEAPLLDPQMATDHTAYDPSLSPLSKSPWSSHMNEGPSTSNNNEALIGSLVREEGHIYSLAATKDLLYTGSESKNIRVWKNQKEFTGFKCHSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNDHQHKRVATLPTLRNYIKCSVKPSNYVEVKRHRNVLWIKHYDAISCLGVTEDHCYIYSASWDRTFKVWRTSNFKCLESVIAHDDALNALVVGFDDLVFTGSADGSVKIWRREVHGKGTKHFFTHTLLKQECAVTALTMSGEGSLLYAGSSDGLVNFWVRETNLEHRGTLRGHELAILCLAAAGSLVFTGSADMSICVWKRSLSNEHTCLNVLSGHSGPVKCLAAERDLEGMCNERRWILYSGSLDKSVKMWKVSENATALHNPQPPRHSVDHFPIVSSLKKVGSKF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02055 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 361 IPR001680 GO:0005515
Viun2g02055 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 271 IPR001680 GO:0005515
Viun2g02055 448 MobiDBLite consensus disorder prediction 1 81 - -
Viun2g02055 448 MobiDBLite consensus disorder prediction 54 81 - -
Viun2g02055 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 43 419 IPR045182 -
Viun2g02055 448 FunFam BnaA09g28200D protein 189 276 - -
Viun2g02055 448 SUPERFAMILY WD40 repeat-like 89 419 IPR036322 GO:0005515
Viun2g02055 448 MobiDBLite consensus disorder prediction 10 29 - -
Viun2g02055 448 Gene3D - 187 433 IPR015943 GO:0005515
Viun2g02055 448 Pfam WD domain, G-beta repeat 236 271 IPR001680 GO:0005515
Viun2g02055 448 Pfam WD domain, G-beta repeat 202 230 IPR001680 GO:0005515
Viun2g02055 448 Pfam WD domain, G-beta repeat 284 319 IPR001680 GO:0005515
Viun2g02055 448 Pfam WD domain, G-beta repeat 369 414 IPR001680 GO:0005515
Viun2g02055 448 Pfam WD domain, G-beta repeat 328 361 IPR001680 GO:0005515
Viun2g02055 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 319 IPR001680 GO:0005515
Viun2g02055 448 Gene3D - 35 186 IPR015943 GO:0005515
Viun2g02055 448 SMART WD40_4 82 119 IPR001680 GO:0005515
Viun2g02055 448 SMART WD40_4 120 157 IPR001680 GO:0005515
Viun2g02055 448 SMART WD40_4 367 414 IPR001680 GO:0005515
Viun2g02055 448 SMART WD40_4 193 231 IPR001680 GO:0005515
Viun2g02055 448 SMART WD40_4 281 320 IPR001680 GO:0005515
Viun2g02055 448 SMART WD40_4 234 272 IPR001680 GO:0005515
Viun2g02055 448 SMART WD40_4 324 361 IPR001680 GO:0005515
Viun2g02055 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Viun2g02055 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 159 IPR001680 GO:0005515
Viun2g02055 448 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Viun2g02055 448 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Viun2g02055 448 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02055 Viun-Chr2 28819897 28821824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02055 199 415 Miscellaneous Gene Families AT5G08390 21.875 1.16e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02055 - - gmx:100778593 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02055 2 28819897 28821824 Viun2g02055 2 28819897 28821824 ECH