Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02021 ATGCGGATGCACTTGAGGCCGTTCTTTTGCGAGGTTAACCTGTTGAACAGGTTAAGCTCGCAAGTGCAAGCTCGTTCATATATCCGTCGTCGTGAACCGTTTCTCACCAAAGTTTCTCACTACCTCAACCGTGCCAAACTCATTGACTCCATTAGACTCACTCTACGCTCTAAACACCCCGACGCCTCTCTTCCCTCTCTCATAAACCACCGTCTTTTTGACTCTTTCGTGCTCACTCATGCCCTTCGTTCTTCCCCTTCTGCAGATTCCGCTCTTTCCATTGTCCATGCCCTTGAAAAGAATTCCAATTTTTCCCACACCGACCACACACTCCATGCACTTGCAACTGTTCTTGCCAAGGCTGGTAGATGCTCCGAGCTCAAATCTCTCATTGATGCTATCCGAGCCAACCGATTCGGCACTTTTCGGATCAGCTCCATGAATCTCATGCAGTGGCATGCTGCAGCTGGGGACCTCGACACTGTCCTTCAAGTGTGGGAACAGTATACACTCGAGAGCAACCATCTCTGCACTGAATCATATAACATTGTTATGGCTCTTTATGCTCAAATGGGAAAGGACTCGGAGGCTGTACAAGTTTTTCAGAGGATGATTGATGAAGGGTCTCTGCCGAATTGCAGGAGCTGCACTATAATAATCGAGCACCTTGTGAAGGCCCGGATGTTATCAGAAGCATTGGAGGTTTTTAACCTGTTGCCTTTGATGAGGATCAAACGCACTTTGAAGCAGTATTCCGTACTGCTAGAGGGTTTTGTAGGTAGCAAACGGTTTGATGAAGTGAAAATTTTAGTTGATGAAATGCAGGTTGATGGAATACTTCCTAGTAGACGCGTGAGTTTGTTGCTGCAGCAGATGAAGGAGGAGGGAATTCTTGAAGATAAGGAGCAATTACTGCGAGGAATTTTGCCAGATGAGAGAATCAGAAGCGTAAGTTATTCTGTTGATGGTGGTGACGGGGAGGATGATGAGAATGAGATTGAGGTTGAAGACGAGAATATAAATGATGCTAGTCAATGTGATCTTGTTGATGGAGTTCATTTAAAACCGTGGCTGGACCCACGGGCTTTGGCCAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACAAGGTTGGTTTGCAAGATGCTTAGAAGTTTCAAAACACCAGAAGCTGCATGGAGTTTTTTCTGCTGGGTTGCTAATCAAAGTGGATTTACTCATGACATATACACTGTACAAAGAATCATGACCCTACTAGCACGCCATGGACGTACTGACTTGGTTAATACACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAGCACCATCAGGCTGATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTATGAAGGTTTTCAATGACGATCGAATACTTTGCGGTCCCATATCAAATGTAAACCTGATGCTTCTGTATTCGTCTCTTCTAAGAACATTGACTAAGTGTGGAAGAAACTCCGATGCCTTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCAGACATCCAGACATTTTCAGGCCTAATGCTGTACTTTTCACAGCTTGGGGACATAAAAACAGTGCAAAAGCTCTTTGCAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTTATTTGTTTAAGGTATTAATCCAAGGTTATTGCACGTCAAATAGAGCTGCACTAGCATGGAGGCTCTTTGAAGACATGAAGAATTCTGGTTTAGTGCCTGACTCTGCCACCAAAGAGTTGTTAGTTAAGAGTCTCTGGAAAGAGGGGAGACGAAGAGAGGCTGCAGCAGTAGAAGAGAGTTTTGAGGAAATAAATACGGTTCTTCCACTTACATTGCAGGGTCATGAATGGACTGTCAGCTCTGCAGATCTCACAAGACTTTATAATATTTATTCTAATTCTTTTGCTTAA 1983 0.4428 MRMHLRPFFCEVNLLNRLSSQVQARSYIRRREPFLTKVSHYLNRAKLIDSIRLTLRSKHPDASLPSLINHRLFDSFVLTHALRSSPSADSALSIVHALEKNSNFSHTDHTLHALATVLAKAGRCSELKSLIDAIRANRFGTFRISSMNLMQWHAAAGDLDTVLQVWEQYTLESNHLCTESYNIVMALYAQMGKDSEAVQVFQRMIDEGSLPNCRSCTIIIEHLVKARMLSEALEVFNLLPLMRIKRTLKQYSVLLEGFVGSKRFDEVKILVDEMQVDGILPSRRVSLLLQQMKEEGILEDKEQLLRGILPDERIRSVSYSVDGGDGEDDENEIEVEDENINDASQCDLVDGVHLKPWLDPRALASALRNWSPDEVAALEGANFVWTTRLVCKMLRSFKTPEAAWSFFCWVANQSGFTHDIYTVQRIMTLLARHGRTDLVNTLISKIRMEGMRLPFSTIRLIIDFYGISKNADAAMKVFNDDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMLYFSQLGDIKTVQKLFAMVRQSGLEPDAYLFKVLIQGYCTSNRAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESFEEINTVLPLTLQGHEWTVSSADLTRLYNIYSNSFA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02021 660 Gene3D Tetratricopeptide repeat domain 382 489 IPR011990 GO:0005515
Viun2g02021 660 Gene3D Tetratricopeptide repeat domain 492 650 IPR011990 GO:0005515
Viun2g02021 660 Gene3D Tetratricopeptide repeat domain 78 350 IPR011990 GO:0005515
Viun2g02021 660 Pfam PPR repeat family 562 609 IPR002885 -
Viun2g02021 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Viun2g02021 660 PANTHER OS01G0167750 PROTEIN 3 659 IPR044175 -
Viun2g02021 660 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Viun2g02021 660 NCBIfam pentatricopeptide repeat 497 529 IPR002885 -
Viun2g02021 660 NCBIfam pentatricopeptide repeat 215 239 IPR002885 -
Viun2g02021 660 NCBIfam pentatricopeptide repeat 567 599 IPR002885 -
Viun2g02021 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Viun2g02021 660 Pfam PPR repeat 251 279 IPR002885 -
Viun2g02021 660 Pfam PPR repeat 215 238 IPR002885 -
Viun2g02021 660 Pfam PPR repeat 497 525 IPR002885 -
Viun2g02021 660 Pfam PPR repeat 180 208 IPR002885 -
Viun2g02021 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Viun2g02021 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Viun2g02021 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02021 Viun-Chr2 28609808 28614161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02021 500 636 Glycosyltransferase AT1G05670 26.619 6.13e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02021 - - gmx:100779372 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02021 2 28609808 28614161 Viun2g02021 2 28609808 28614161 ECH