Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01919 ATGTCTGGTTCTTTTAAGCAGAAACTGAGGAATTCCTTAACGAAAAAGGGTAGGCGAAGCAGCAAAGTCATGTCCGTTGAAATTGAGGATGTTCACGATGCGGAGGAGTTGAAAATAGTTGACGAGTTCCGTCAAGCTCTTATTTTGGACGAACTACTCCCTGCAAAACATGATGATTACCATATGATGCTTAGATTCCTCAAGGCCAGGAAGTTTGATGTCGAAAAAACAAAGGAAATGTGGACTGAAATGCTCAAATGGAGGAAGGAGTTTGGTGCTGATACTATTCAGGAGGACTTTGATTTCAAAGAAATTGATGAAGTTTTGCAATATTATCCCCAAGGACACCACGGAGTGGACAAAGAGGGAAGGCCTGTATATATCGAGAGACTAGGCCAAGTCGATGCCGGGAAAATGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTAAAGGAGTTCGAGAGGACATTCGATGTGAAGTTTGCCGCTTGTTCGATTGCTGCAAAGAAGCACATCGATCAAAGTACAACTATCCTGGATGTGCAGGGAGTGGGGCTTAAAAGCTTCAACAAACACGCTAGGGAACTCGTTACTCGTCTTCAGAAGATTGACGGTGATAACTATCCTGAGACCTTGAACCGCATGTTCATCATCAATGCCGGATCTGGATTCAGAATACTGTGGAACACCGTGAAATCATTCCTTGACCCTAAGACCACCGCGAAAATCAATGTTCTTGGCAACAAGTTTGACACCAAATTGCTAGAAATAATTGATGCAAGTGAGTTGCCTGAATTTTTGGGAGGTACTTGTACTTGTGCTGATAAAGGAGGCTGTTTGCGCTCTGATAAGGGCCCATGGACGGATCCAGAAATATTGAAGATGGTTCAGAGCGGTGCTCACAAATGCTCAAGAAGGGGTGACTCACACGGCGAGGAAGAGAAATCAACCGCTGAGGAACCCGAGACTCCCAAGTGTGGGGCAACTTCCCCTCAGGTTACTCCCGTTGAGGTCCCTGCTACAGAAGCCTCCAAGCCTGTGGAGTTAGCCCCGGTTGATACTTCTATGCAAAAAGTTGACGACAACTCTCCCCAACCTAATGACGCAGGCACTGCGGTTGATCCAACTGCGGCAGCAGCGGCTGCCGCGGCGGCAGCGGCGGCGGCGGCAGCATCAACAGAGTTCTCGACTGTGATGAAACGCATGGCTGAGTTGGAGGAGAAAATGGTGACCATGAATAAGCAGTCTGCATCCATGCCACCCGAGAAGGAGCAAATGCTGAATGCAACTATGACTCGGGCGGATGACTTGGAGCAGCAACTTCTGGCCACCAAGAAGGCTCTGGAGGATTCACTGGTTAAGCAAGAAGAGCTTTCTGCATACATTGAGAAAAAGAAGAAGAAGAAGAAGAGATTCTACTTCTTCTAA 1437 0.4697 MSGSFKQKLRNSLTKKGRRSSKVMSVEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDVEKTKEMWTEMLKWRKEFGADTIQEDFDFKEIDEVLQYYPQGHHGVDKEGRPVYIERLGQVDAGKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKSFNKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKFDTKLLEIIDASELPEFLGGTCTCADKGGCLRSDKGPWTDPEILKMVQSGAHKCSRRGDSHGEEEKSTAEEPETPKCGATSPQVTPVEVPATEASKPVELAPVDTSMQKVDDNSPQPNDAGTAVDPTAAAAAAAAAAAAAAASTEFSTVMKRMAELEEKMVTMNKQSASMPPEKEQMLNATMTRADDLEQQLLATKKALEDSLVKQEELSAYIEKKKKKKKRFYFF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01919 478 MobiDBLite consensus disorder prediction 359 373 - -
Viun2g01919 478 Coils Coil 391 411 - -
Viun2g01919 478 FunFam SEC14 cytosolic factor 92 304 - -
Viun2g01919 478 Pfam CRAL/TRIO domain 110 272 IPR001251 -
Viun2g01919 478 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 6 469 - -
Viun2g01919 478 SUPERFAMILY CRAL/TRIO N-terminal domain 32 100 IPR036273 -
Viun2g01919 478 PRINTS Cellular retinaldehyde-binding protein signature 231 250 - -
Viun2g01919 478 PRINTS Cellular retinaldehyde-binding protein signature 62 84 - -
Viun2g01919 478 PRINTS Cellular retinaldehyde-binding protein signature 264 273 - -
Viun2g01919 478 SMART CRAL_TRIO_N_2 59 84 IPR011074 -
Viun2g01919 478 SUPERFAMILY CRAL/TRIO domain 104 300 IPR036865 -
Viun2g01919 478 CDD SEC14 105 273 IPR001251 -
Viun2g01919 478 Gene3D - 9 91 - -
Viun2g01919 478 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 104 278 IPR001251 -
Viun2g01919 478 Gene3D - 92 303 IPR036865 -
Viun2g01919 478 SMART sec14_4 104 275 IPR001251 -
Viun2g01919 478 MobiDBLite consensus disorder prediction 304 324 - -
Viun2g01919 478 Pfam CRAL/TRIO, N-terminal domain 5 83 IPR011074 -
Viun2g01919 478 MobiDBLite consensus disorder prediction 301 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01919 Viun-Chr2 27935021 27939625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01919 40 269 Acyl Lipid Metabolism Gene Families AT5G47730 28.870 4.41e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01919 K26544 - gmx:100796901 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01919 2 27935021 27939625 Viun2g01919 2 27935021 27939625 ECH