Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01678 ATGGCAAGCATCACTGCACCTGTGCCAACTGTACCAACCCACCACCTATTCTTCGACCAAAACCTTGATCTGAAAAACAACAACCTTGGTGCTTTGCCTTCTACCAACCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACCTTCCCACGTCCCCTCATTCCTCAAACAATCACTTTCACCAAGAAGGAGCCAAAGAAAAAGAAGAGAAAAGATGCTACAACGTCAGACATACTGCACTTGATGGACGTTCTACCTTTTCCTACACCCATTGACATCTACACTTCATTGATAAAAGAGTGCACTGTTTCCGGCGACCCAGAATCTGCCATTGAGTTGTACACTCACATCTCCAAGAGTGGCATCAAACCCCCATTGCCTTTCCTCAATCGGATTCTCATTATGTTTGTGTCCTGTGGTCTGTTGGAAAATGCACGCAACATGTTTGAAAAAATGCGTGTGAGGGACTTCAACTCTTGGGCGACCTTGTTTGTTGCGTACTATGATAATGCCGATTATGAGGAGGCTACGGCTGTTTTTGTCAACATGTTAGGTCAATTGGGTACGCTGGAATTTCCTCCGTGGATATGGGCTTGTCTTCTCAGGGCTTGTGCATGCACTTTGAATGTCCCTCTGGGATTGCAAGTTCATGGATGGTTGTTGAAGTTGGGTACTTGTGATCATGTGCTTCTCAGCAGCTCTTTGATCAACTTCTACGGGAGGTTCACGAGCCTGGAAGATGCGAGTGCTGTCTTCAATGGGGTGTCGCGGCATAACACGCTGACTTGGACGGCTAAAATCGTTAGTGGTTGCAGGGAAAGGCATTTCTCTGAGGTTTTTGGTGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACTTTTTCTAGTGTTCTCAAGGCGTGTGGAAAGATGCTGAATCAGGAACGATGTGGTGAACAAGTCCATGCTGATGCCATCAAACTTGGGCTGGTGTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTGTTGAGAGATGCAAAACAAGTGTTTGAGATAATCCGAGAGGAGAAAAAGGTTGATTGCTGGAATGCTATGCTTTCGGGTTACATAAGGAATGGTTTCCACATTGAAGCTGTTAAGTTTCTGTATATGATGCAGGCAGCTGGAATGCAGCCCGGGGAATCTCTGCTTAAAAAATTAAGAATTGCTTGTGGCAGCACTCAAACATGA 1251 0.4628 MASITAPVPTVPTHHLFFDQNLDLKNNNLGALPSTNHQLELLPPLRYPIHTFPRPLIPQTITFTKKEPKKKKRKDATTSDILHLMDVLPFPTPIDIYTSLIKECTVSGDPESAIELYTHISKSGIKPPLPFLNRILIMFVSCGLLENARNMFEKMRVRDFNSWATLFVAYYDNADYEEATAVFVNMLGQLGTLEFPPWIWACLLRACACTLNVPLGLQVHGWLLKLGTCDHVLLSSSLINFYGRFTSLEDASAVFNGVSRHNTLTWTAKIVSGCRERHFSEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMYGRCGLLRDAKQVFEIIREEKKVDCWNAMLSGYIRNGFHIEAVKFLYMMQAAGMQPGESLLKKLRIACGSTQT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01678 416 NCBIfam pentatricopeptide repeat 368 400 IPR002885 -
Viun2g01678 416 NCBIfam pentatricopeptide repeat 96 127 IPR002885 -
Viun2g01678 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 98 411 IPR046960 GO:0003723|GO:0009451
Viun2g01678 416 Gene3D Tetratricopeptide repeat domain 69 210 IPR011990 GO:0005515
Viun2g01678 416 Gene3D Tetratricopeptide repeat domain 268 416 IPR011990 GO:0005515
Viun2g01678 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Viun2g01678 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Viun2g01678 416 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 317 416 - -
Viun2g01678 416 Pfam PPR repeat 339 363 IPR002885 -
Viun2g01678 416 Pfam PPR repeat 368 396 IPR002885 -
Viun2g01678 416 Pfam PPR repeat 135 159 IPR002885 -
Viun2g01678 416 Pfam PPR repeat 96 125 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01678 Viun-Chr2 26381682 26383110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01678 166 416 Glycoside Hydrolase AT3G49170 23.774 1.26e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01678 - - gmx:100778405 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01678 2 26381682 26383110 Viun2g01678 2 26381682 26383110 ECH