Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun2g01582 | ATGGGTAATCCACGGAGATCGAAGACGGCCGACGAACTTCATTCGGCGGCGAGGTCTGGGGATCTCATCGCCGTTCAGTCAATTTTGGCTTCAAATCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCTCTACATTTAGCAGCATTTTCCGGGCAAGCAGAGGTAGTCACTTATCTCTGCAAGAACAAGGCTGATGCTGGTGCTTCTGCTATGGATGACATGGCTGCAATACACTTTGCTTCACAGAAGGGACATTTAGAAGTTGTTCGAGCTCTACTTTCAGCTGGGGCCTCTCTCAAAGCATCTACCCGCAAAGGCATGACTTCATTACACTATGCTGTTCAGGGTTCCCATCTGGAACTCGTCAAGTATTTGGCCAAGAAAGGGGCAAACCTTGGTGCCCAGACAAAGGCAGGAAAGACCCCTTTGGATCTTGCTAGCAATGATGAAATTCGATCCTTTCTGGAGGAATTTGAGAAGTCAGCAAAGAATGGAGAATTGGGAAAGCAAGATAAAGATAAAGCTGAAGAATTTGCTCCCAAGACATCTGAATTGGGATCAGAAGGTGATTTGAATACAGAACCTGCTGCTGCTGCTCTAGATGAAGAAAAAAATGCAAGAGAAAAGAGAAAGGGTAATGAAGATGACGCAAGAGTAGAGTCGTCACAACCAAAAAAAGCGAGAGTTAAGTTAAGCCATCTCCAAAGTTCAGATGATACCCAAGAAGAAGAGAACATGTAG | 750 | 0.4507 | MGNPRRSKTADELHSAARSGDLIAVQSILASNPLAVNSRDKHSRTPLHLAAFSGQAEVVTYLCKNKADAGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKASTRKGMTSLHYAVQGSHLELVKYLAKKGANLGAQTKAGKTPLDLASNDEIRSFLEEFEKSAKNGELGKQDKDKAEEFAPKTSELGSEGDLNTEPAAAALDEEKNAREKRKGNEDDARVESSQPKKARVKLSHLQSSDDTQEEENM | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun2g01582 | 249 | ProSiteProfiles | Ankyrin repeat region circular profile. | 42 | 68 | - | - | |
| Viun2g01582 | 249 | ProSiteProfiles | Ankyrin repeat region circular profile. | 108 | 135 | - | - | |
| Viun2g01582 | 249 | PANTHER | ANKYRIN REPEAT PROTEIN | 11 | 218 | - | - | |
| Viun2g01582 | 249 | Gene3D | - | 6 | 182 | IPR036770 | - | |
| Viun2g01582 | 249 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 104 | - | - | |
| Viun2g01582 | 249 | PRINTS | Ankyrin repeat signature | 43 | 58 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | PRINTS | Ankyrin repeat signature | 91 | 105 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | ProSiteProfiles | Ankyrin repeat profile. | 42 | 74 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - | |
| Viun2g01582 | 249 | Pfam | Ankyrin repeats (3 copies) | 80 | 158 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | Pfam | Ankyrin repeats (3 copies) | 13 | 70 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | SMART | ANK_2a | 42 | 71 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | SMART | ANK_2a | 108 | 137 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | MobiDBLite | consensus disorder prediction | 203 | 243 | - | - | |
| Viun2g01582 | 249 | ProSiteProfiles | Ankyrin repeat profile. | 108 | 140 | IPR002110 | GO:0005515 | |
| Viun2g01582 | 249 | MobiDBLite | consensus disorder prediction | 165 | 249 | - | - | |
| Viun2g01582 | 249 | SUPERFAMILY | Ankyrin repeat | 13 | 160 | IPR036770 | - | |
| Viun2g01582 | 249 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun2g01582 | 11 | 149 | Miscellaneous Gene Families | AT5G02620 | 32.394 | 4.57e-14 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun2g01582 | - | - | gmx:100812821 | 414.075 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun2g01582 | 2 | 25751953 | 25753999 | Viun2g01582 | 2 | 25751953 | 25753999 | ECH |