Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01436 ATGTCGTTAACATGCGTTCCTGGATGTGGTTTGCTCCGCCGTCAACGCCAATGTTTCAGTTTATTTTCTTCTTCTGCTTCTTGTGCACTGATGATGGAAGACCAAGTGTTTGATGAAAGTCCAAAGTCTTATGCTAGTTTTGTGATTGACAGGCCTGTGCCCCATGTTCCTGCATCAAGGAGGAATTATTTTCCTTTAGTGTCTAGGGTGCTGAAATCACTGAGTTGGAGGGTGGCTAGAGAAGTAAGGTTTGGGAGTTGGGTTGACAGTCATGGGTTTTCTTATTCAATCAATTGTTTTAGGATTATGGTTCATGCTTTTGCTTTGGCGGGGATGCGTTTGGAAGTGTTTGCTTTGCTTAGAGATGTTGTTGAGTTCTGTAATGAGGCCAACTACAACACCTTTGAATTGTTTTCAGCTTTGCTGGATTCACCCCACCATGTTGAAAGATCCGGCGAAGTATTTGAAGTGCTTATGAAAGTGTTTGCATCCAACTCTATGTTGGAAAATTCTCTTAATGTATTTGTGAATGCTAAGTATGTTGGGCTTGAGCCTCATATAAGGACCTGCAATTTCTTGTTGAAATGTTTGGTTGAAGCGAATAGAGCGGAGTGTGTTAGATGGTTTTTTGAGGAATTGAAGGACCGTGGTCCATTGCCAAATATCCATACCTATACAATCATGATGAACTTTTATTGTAGTAATGTTCGGTGTGATTCAGATATGAGACAGGCTGCTGCGATTCTAGGGAAAATATATCAGATTGGGGAAAAACCAACTCTTGTCACTTATAGTACTTATATTCATGGACTTTGTAAAGTTGGTTGTGTTGAGGCAGCGGTGATGTTAATTCGCAATTTGCTAAAAAAAAATGAGCCTCTCAATAGTCATTCTCTTAATTCTGTAATTTATGGGTTTTGTAAAAGAGGTGACGTGTGTGAGGCTATGCAAGTTTTTGTAGAAATGAAGAGGTCTGGGATATTGCCAGATGTTTATAGCTACAGCATATTAATTGATACATTCTGCAAGAAAGGGGACCTAATAAAATCTTTTGACTTGTTGGAGGAAATGCAAGGCTCCCAGGTAAAACCATCCGTTGTTAGCTATACCTCCCTCATCCATGGTCTGTGCAAGAAGAATCTGACACAGCATGCAGTGGAAATATTCCGCAGTATTGGTGCTTCTAGTGTCAAATATGATCAGATTGTTTATGAAACTTTAATTGATGGATTTTGTACTCAAGGTGATGTGGATTCAGCCATCAAGCTTTTAAAGAAGATGACCTGCTATAATTTGGCTCCTTCTGCTTTTAGTTACCGCAGTCTAATTAAAGGATACTACAAACTAGGACTATTCGATCCGGCATTGGATGCTTTTGAAACCATGCTACAAAATGGTATTTGGCCAGATACTATTTCTTGTAATTATATTCTTGATGTATCTTGTAGGGCAGGTTACTTCAACGTAGCCTTGAAGCTGTTGGAGAACTTCGAAGAACATGGATTTAACCTCAACCAACATTCATATAATGCAATCATCTATAAACTTTGTAAAGAAGGTTGTCCAGAAAGAGCATTGGAGCTACTGCCAAGAATGCTTAAAAGGAATGTTCCTCCGGCAGTTGTTAATTATAGAACTCTTATATCTGGCTTTGCCAAACAGTCAGATATAAACAGGGCTGTGAAGTTATTCACCAGAATGACAGAAGTAGGGATCACTCTCAACACTGCCACATATACAATTCTTATGAGTATATTTAGTCATAGTGGCAACATGCATGAAGCATATGCAATTTTTAAGGAAATGAAAGAAAGGGGTTTGCGTCCAGATCAGATTTCATATACAACTTTAATTGCTGGCTTTTGTAATATTGGAGAATGGAGAAAGGCATGGGCATTATTTGGAGAAATGTCGAGGGAAGGCATTTTGCCAAATGTATTTACTTATACTTGCATGATTGATGGATTTTGCAAGTCAAACCGGATAGATTTAGCCACCTGGCTGTTTGATAAAATGAACAGAGATTCAGTTATTCCTGATGTTGCAACTTACACTGTCCTCATTGCTTGGTACCATAAGCATGGGTACATAGACCAAGCACGTAAGCTATATGATGCAATGAAGGAAAAGGGTGTTTTGCCAGATGATATAACTCATAATATTCTAGGTCTGAAGGCTGTGAAGTTCAAAGAAGGCTAA 2199 0.3888 MSLTCVPGCGLLRRQRQCFSLFSSSASCALMMEDQVFDESPKSYASFVIDRPVPHVPASRRNYFPLVSRVLKSLSWRVAREVRFGSWVDSHGFSYSINCFRIMVHAFALAGMRLEVFALLRDVVEFCNEANYNTFELFSALLDSPHHVERSGEVFEVLMKVFASNSMLENSLNVFVNAKYVGLEPHIRTCNFLLKCLVEANRAECVRWFFEELKDRGPLPNIHTYTIMMNFYCSNVRCDSDMRQAAAILGKIYQIGEKPTLVTYSTYIHGLCKVGCVEAAVMLIRNLLKKNEPLNSHSLNSVIYGFCKRGDVCEAMQVFVEMKRSGILPDVYSYSILIDTFCKKGDLIKSFDLLEEMQGSQVKPSVVSYTSLIHGLCKKNLTQHAVEIFRSIGASSVKYDQIVYETLIDGFCTQGDVDSAIKLLKKMTCYNLAPSAFSYRSLIKGYYKLGLFDPALDAFETMLQNGIWPDTISCNYILDVSCRAGYFNVALKLLENFEEHGFNLNQHSYNAIIYKLCKEGCPERALELLPRMLKRNVPPAVVNYRTLISGFAKQSDINRAVKLFTRMTEVGITLNTATYTILMSIFSHSGNMHEAYAIFKEMKERGLRPDQISYTTLIAGFCNIGEWRKAWALFGEMSREGILPNVFTYTCMIDGFCKSNRIDLATWLFDKMNRDSVIPDVATYTVLIAWYHKHGYIDQARKLYDAMKEKGVLPDDITHNILGLKAVKFKEG 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Viun2g01436 732 Gene3D Tetratricopeptide repeat domain 477 630 IPR011990 GO:0005515
Viun2g01436 732 Gene3D Tetratricopeptide repeat domain 240 346 IPR011990 GO:0005515
Viun2g01436 732 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 541 722 - -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Viun2g01436 732 Gene3D Tetratricopeptide repeat domain 86 239 IPR011990 GO:0005515
Viun2g01436 732 Gene3D Tetratricopeptide repeat domain 631 728 IPR011990 GO:0005515
Viun2g01436 732 Gene3D Tetratricopeptide repeat domain 347 462 IPR011990 GO:0005515
Viun2g01436 732 Pfam PPR repeat 362 390 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Viun2g01436 732 Pfam PPR repeat family 295 343 IPR002885 -
Viun2g01436 732 Pfam PPR repeat family 400 448 IPR002885 -
Viun2g01436 732 Pfam PPR repeat family 679 722 IPR002885 -
Viun2g01436 732 Pfam PPR repeat family 186 234 IPR002885 -
Viun2g01436 732 Pfam PPR repeat family 539 584 IPR002885 -
Viun2g01436 732 Pfam PPR repeat family 609 658 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 332 365 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 683 715 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 403 435 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 612 646 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 647 681 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 262 294 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 544 575 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 367 398 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 298 331 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 507 539 IPR002885 -
Viun2g01436 732 NCBIfam pentatricopeptide repeat 578 610 IPR002885 -
Viun2g01436 732 Pfam PPR repeat 473 502 IPR002885 -
Viun2g01436 732 Pfam PPR repeat 508 537 IPR002885 -
Viun2g01436 732 Pfam PPR repeat 262 290 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Viun2g01436 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Viun2g01436 732 SUPERFAMILY HCP-like 407 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01436 Viun-Chr2 24840198 24850025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01436 242 732 Glycosyltransferase AT1G05670 31.048 3.48e-71 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01436 - - vra:106776742 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01436 2 24840198 24850025 Viun2g01436 2 24840198 24850025 ECH