Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01412 ATGTGTTTCTCACTCCCTTCACCGGCTAGGTCCGCAGAGGGTCCAATGGAGGTTTCTCCCGCTACCAATTTCGTTTCCGAAACTCTATGTCCCTCTGAATCGGTCGGCGATGGTTGCGATCATTCTGGTCGGTTATCGGCCATCGGCGAATCTACCCTTCCGGGGGTTTACGGAGTTTGCGGCGAGGAAGCTGCGCAAGAGAATTGTAATACGGACACGCAGTTCCGGCAGCTCAACAACGATTCGACTTTGCTGTTGACTTCTTGTTCACCCGTCTCGGCGGTGGCGCCGGAATCGTGGGTTACTACCCAAGGGAACTGGCTCTTAGATGAGAACGAGGGTTCAATAGGTGCAGAATCCTTCTATGCAATTGGGCCTTCTAACATGGGAGCAGGACTTTCGAATCTCGGCAATACGTGTTTTCTCAATGCTATACTGCAATGCTTTACACATACAGTGCCTCTAGTGCAGGGTATTCGTGCGTGTACTCATAATTTCCCTTGCGCTGGTCATATGGATTGCTTCTGTGTTATATGCACTTTTCGTGACCAGGTTGAACGTTCCCTGGCCGCATGTGGACGGACTCTCTCACCTTTGAAATTTGTGAACAATTTGAGTTATTTTTCTTCTGGATTTAGAAGATATCAGCAGGAGGATGCCCATGAATTCATGCAGTGTGCTTTAGATAAACTGGAAAGGTGTTTCCTAGATTTGAAGAAGACTGATTTAAATTTTGAAGATGATAATCTTGTACAGAAAGTATTTGGTGGTCGTCTCATTAGCAAACTTCGATGTTGTAGCTGTGGTCGCACTTCTGACACTTATGAGCCATTGATTGACATGAGTTTAGAGATAGAAAGTGTAGATTCTCTTCCGAGTGCTTTGGACTCTTTTACTAAGGTGGAAAAGATTGACGCAAACTTTAGATGTGATAACTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATATGACACCATCAATTGCAACATTTCATTTAAAAAGATTTAAGACAGATGGGATACTTGTTGAGAAGATTGATAAGCATATTGATTTCCCGTTGGAGTTAGACTTGCAGCCTTACACCATTTCTAATCAAAACAATGATGTACTGATGAAATATGATTTATATGCCATTGTTGTGCATACTGGATTTTCTTCTACTTCAGGGCATTACTTCTGCTTTGTGCGCTCTGGTCCAGACACATGGCACAAGTTGGATGATTCGATGGTTACTGAGGTATCAGGAGACTCTGTACGGTCTCAGGAAGCATATATACTGTTTTATGCAAGACAGGGTACTCCATGGTTTTCTAGTATCATGGAATCTCAAAAGCAATGTTTGGATCCAAATATTTCAAGTACATCTCCTACGTCTGTTTTAGACGTTGGTGATGACATATCTAAATCTAATCCCAATTTGGTTCCAAGTACTGAGGAAGGCGGGGCTGCTGTATCCAAAGGATGTTCTGATCCTCCGTTTGATTATTTTTGTCCAGACGAACTTGCTTTTTCTGAACCAAATGACTCTAAAGATGCTACTCATGGCTGTGGACAATTTCTCTACGGGTCAAATCAGGAAAGCGTTTCTCTCCATAGCAGCTCTAAAGACGTTGAAACCCAAAAGTTGTTCAGGAACAGGGTGACCTTGGATTGTCGTTCCGTATTTGATGGAAAATCATATACTGAGAATTCTAGTCTTGATAATAACTATGACTGTGAGGAAGAAGTTGATTTTAGAGAGAATTTTGGTGCTTGTTCACCATCTCTGCCTTCGCCTCCGCCCACCTCCCCTCTTGAAGATGCTTCAGATAAATTTCATGTCTCACGTGATAAATCGGAGAGTAAGCAGAGCCGTAAAAGATCACTCAATCAGTGTAACGAGAATCCTGAACGACGAGAAGCTGTGAAATATCTGAACAAGACTGGTTCAAGGAGAGGGGCACTTTTGAAATATGTTACTCAAGATGAAGCTTCAAACAAGAGAAAAAAAGTGGATTCATTGCAGTGTAAGAAAACCACCTCTCTTGATCGCAAAAAATCAAACCAAACATCTGTCAGCCGCCCTGTGGCAGCTGGAATTTCACAGTGA 2100 0.4295 MCFSLPSPARSAEGPMEVSPATNFVSETLCPSESVGDGCDHSGRLSAIGESTLPGVYGVCGEEAAQENCNTDTQFRQLNNDSTLLLTSCSPVSAVAPESWVTTQGNWLLDENEGSIGAESFYAIGPSNMGAGLSNLGNTCFLNAILQCFTHTVPLVQGIRACTHNFPCAGHMDCFCVICTFRDQVERSLAACGRTLSPLKFVNNLSYFSSGFRRYQQEDAHEFMQCALDKLERCFLDLKKTDLNFEDDNLVQKVFGGRLISKLRCCSCGRTSDTYEPLIDMSLEIESVDSLPSALDSFTKVEKIDANFRCDNCKEEVSMEKQLMLDMTPSIATFHLKRFKTDGILVEKIDKHIDFPLELDLQPYTISNQNNDVLMKYDLYAIVVHTGFSSTSGHYFCFVRSGPDTWHKLDDSMVTEVSGDSVRSQEAYILFYARQGTPWFSSIMESQKQCLDPNISSTSPTSVLDVGDDISKSNPNLVPSTEEGGAAVSKGCSDPPFDYFCPDELAFSEPNDSKDATHGCGQFLYGSNQESVSLHSSSKDVETQKLFRNRVTLDCRSVFDGKSYTENSSLDNNYDCEEEVDFRENFGACSPSLPSPPPTSPLEDASDKFHVSRDKSESKQSRKRSLNQCNENPERREAVKYLNKTGSRRGALLKYVTQDEASNKRKKVDSLQCKKTTSLDRKKSNQTSVSRPVAAGISQ 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01412 699 MobiDBLite consensus disorder prediction 659 699 - -
Viun2g01412 699 MobiDBLite consensus disorder prediction 682 699 - -
Viun2g01412 699 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 377 395 IPR018200 GO:0004843|GO:0006511
Viun2g01412 699 FunFam Ubiquitin carboxyl-terminal hydrolase 20 127 438 - -
Viun2g01412 699 MobiDBLite consensus disorder prediction 588 634 - -
Viun2g01412 699 Pfam Ubiquitin carboxyl-terminal hydrolase 132 432 IPR001394 GO:0004843|GO:0016579
Viun2g01412 699 SUPERFAMILY Cysteine proteinases 129 434 IPR038765 -
Viun2g01412 699 MobiDBLite consensus disorder prediction 606 634 - -
Viun2g01412 699 Gene3D Cysteine proteinases 127 474 - -
Viun2g01412 699 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 132 147 IPR018200 GO:0004843|GO:0006511
Viun2g01412 699 MobiDBLite consensus disorder prediction 659 681 - -
Viun2g01412 699 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 131 435 IPR028889 -
Viun2g01412 699 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 83 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01412 Viun-Chr2 24598154 24602226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01412 132 434 Miscellaneous Gene Families AT2G24640 35.669 1.47e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01412 K11855 - gmx:100808015 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01412 2 24598154 24602226 Viun2g01412 2 24598154 24602226 ECH