Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01271 ATGAAGAGAAACAAAATTTCCTCACTCTTTTTCATCTCCTTGTTGGTGATTGTCTTTGCCACCTTCTCCACCACAGTTTCTGTGGAAGCAAGGAAGACTAAGAAAAATGTTCACAAACGTAACAGTCATAAAGACAATGGCCATGGTCGAGGGTCACATTCTCCATCATGTCCAACACCAACCCCTCAAGGGAGCATGTTTGATGTTTTGTCTTTTGGTGCCAAGGGTAATGGAGTTTCTGATGATTCAGAGGCACTTGTAGCTGCATGGGACGGTGCATGTAAAGTTGGTGGTGCTACAGTTAAAATTCCAGCACAGTTCAAGTTCCTCATCAAACCTGTTACTTTACAAGGCCCTTGTATGCCACACCTTACTCTTCAGATTGATGGAACTCTGTTGGCACCTCCTGAAGCATCTTCTTGGCCAACATCAAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTACACAACTTCACCATCAAAGGTTCTGGCACTGTTGATGGCCAAGGCTATAACTGGTGGAGTTCCTCAGAATTTTATGACATACAGAAAAAGAGCTATTCAAAAAGAATTCCAAGCATGAAACCAACAGCTATAAGATTTTACTCCACCAACTCTGTCACAGTTCGTGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGATAACTCAAAGGGTATCCAAGTTGACAACATTACAATATCCTCCCCAGAGAATAGCCCAAACACTGATGGCATTCACTTACAGAACACACAGGACGTGCAAATTCAACGTTCTATCATCGCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGTATAAGCTTGGGAGGATTAGGGAAGGACAAGAGTGCAGCATGTGTGTCTGACATCATTGTTGAGGATGTCTCTATGAAAAACACTCTTTATGGAGCAAGGATCAAAACATGGCAGGGAGGCTTTGGTATGGTTAAGAATGTGTCATTTTCCAGAATTCAAGTGTACGATGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAGCAAAAGTGCAAGAATGAGACAAGCACAGTGGTGATTTCTGGGGTTAAGTTTGATAAAATAAGTGGAAGTTTTGGAATGCAGCCTGTTCATATAGCTTGCAGCAGTTCCATTCCATGCACAGACGTTGATTTAACTGACATTGAACTGAGTCCATCTCCTAAATATAAAGGTTTTCAAGAAGCTGTGTGCTGGAACTCTTATGGAAAATCACAAGGGCCATTGCTACCTTCAAGCATTGATGAGTGCTTGAAAAGTGGTGGTGGACTAATCAAGAGGATTGCAAGGTCACACGATAGAGTTTGTTACTGA 1395 0.4151 MKRNKISSLFFISLLVIVFATFSTTVSVEARKTKKNVHKRNSHKDNGHGRGSHSPSCPTPTPQGSMFDVLSFGAKGNGVSDDSEALVAAWDGACKVGGATVKIPAQFKFLIKPVTLQGPCMPHLTLQIDGTLLAPPEASSWPTSSLFQWINFKWVHNFTIKGSGTVDGQGYNWWSSSEFYDIQKKSYSKRIPSMKPTAIRFYSTNSVTVRDIRIINSPLCHLKFDNSKGIQVDNITISSPENSPNTDGIHLQNTQDVQIQRSIIATGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDIIVEDVSMKNTLYGARIKTWQGGFGMVKNVSFSRIQVYDVMFPIMIDQYYCDKQKCKNETSTVVISGVKFDKISGSFGMQPVHIACSSSIPCTDVDLTDIELSPSPKYKGFQEAVCWNSYGKSQGPLLPSSIDECLKSGGGLIKRIARSHDRVCY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01271 464 SMART pbh1 277 297 IPR006626 -
Viun2g01271 464 SMART pbh1 254 275 IPR006626 -
Viun2g01271 464 SMART pbh1 336 357 IPR006626 -
Viun2g01271 464 SMART pbh1 307 328 IPR006626 -
Viun2g01271 464 SMART pbh1 227 253 IPR006626 -
Viun2g01271 464 SUPERFAMILY Pectin lyase-like 59 440 IPR011050 -
Viun2g01271 464 MobiDBLite consensus disorder prediction 32 60 - -
Viun2g01271 464 PANTHER - 66 431 - -
Viun2g01271 464 Pfam Glycosyl hydrolases family 28 99 418 IPR000743 GO:0004650|GO:0005975
Viun2g01271 464 Gene3D - 57 446 IPR012334 -
Viun2g01271 464 FunFam polygalacturonase At1g48100 55 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01271 Viun-Chr2 23245241 23248073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01271 1 463 Glycoside Hydrolase AT3G26610 61.099 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01271 K01213 - gmx:100803027 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01271 2 23245241 23248073 Viun2g01271 2 23245241 23248073 ECH