Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01214 ATGCTTTTGATGTGTGGAATTCCTCGTTATCCCCCTCCTTATGGAACTATGGTTCGTCCTGTCTTTCCTCCACGCCCTCCTGGAGCAGTTAACATACCTCCAATATCACGCCCACCTGTAGCAGGGATTCCTACTGTTCGTCCAATTATTCCTCCTGTTGTCAGACCTATGGTAGCGCCTAGTGCTACCCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAAGATTTATCCACCGGAACACCTACCAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGTGCCTTGCGACTCCTTACTAAATTGAATATTGACGGGCAGGAACTGAAGGTCAATGTGAATCAAGCCATGAAAGAACACCTGGAGCGGTATGTTCAGAAAAAAGCTGAGAACTTGAACAAAGAAACTCAGGCAGGAGTAGTTGAGAAAGACGAAGGTGAACAAACTTCTAGTGCAAATGAGGGTACAAAGGCTGAGAAAGAATCCTCAAATAAAGTGGATAGTGAATCAGCAAATAAGGAATCCCATGATGTGACAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGGGGATCGTGAGGCTTTAGAAAAGATCACAAAGATGATAGAGGAAAGGTTGAAGACAAGACCTTTGCCTCCACCACCTGCACAGCCAAGTGGTGATGGTTCTGTGAATTTAACCTCAGAACAACTTGTTAAAACAAGAGAGGGAGACTCTGTTGATACAGAGAAGAATGAATCTGCTGAAAATAAAAGTGAGAAAGAGACAAACAGTGATAAACCTAGCAGTGAACGGGATAGGTCTGAAAGCCCTGATAGAAGACATGATAGAAAAAGCAGAGAGAGGGACCGAGATAGGGAACTAAAACGAGAAAAGGAAAGAGAACTTGAAAGATATGAGAGAGAAGCAGAGCGGGAACGTATTCGGAAAGAGAGGGAACAAAGACGAAGAATTGAGGAGGCTGAACGTCAATACGAAGCATATTTGAAGGAATGGGAGTATAGAGAACGAGAGAAAGAGAAAGAGCGTCAATATGAAAAAGAGAAGGAGAAGGAAAGGGAACGTAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAAGATTCTAGGAAGAGGTGGCGTAGAAGTGCGATAGAGGAGAAGAGAAAGAAGAGGTTGCGTGAGAAGGAAGATGACATGCTTGACAAACTAAAGGAAGAGGAAGAAATTGCTGAGGCTAAGAAGAAGGCTGAGGAGGAACAAAAACGGCAAAGAGATGCTTTAAAACTATTAACTGAGCATGTGGTAAATGGTGGTAACGAAAATATGATTACTGAAGAGGTTACTGATGAAGTCAAAAGTAATGTTACTGAACAAGATACTATAGCTGATTATAGTCGTGAAGATCATACTGGTGATGGGAATGCACTAAATGTCACCAGTGATGAATTAACCATAGTTGCTCCAACTGATACACAAGGTAATGCTCCTACAAAAAAATTGGGATTTGGCCTAGTTGGTTCAGGGAAAAGAACAACTGTGCCTTCTGTTTTCCATGAAGAGGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTGCCTGGTCCAACACCACCAAATTTGGCTGCTGCTGCCGAATTTGCAAAGCGCATATCCAGTACAAATTTCAAGGAAGATAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGATAAGTCTAACCACCGTGATAGGGACAGAAATGATGAAGATGGTACTCACAACAGAGATGAAAACAAGGACAGAATTCCTGAACGTGACAGGGATCGAGATCATGTATCGGAGAAACTTAAGACTTCTGATAACAAGAGGCTTTTGGATGCTAAACAATTGATTGATATGATACCAAAGACCAAAGAGGAGTTGTTTTCGTATGAGATAGACTGGGCAGTATATGATAAGCATCAACTGCATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAGACTACATTGATAGATTATATTGTTTCTAGTACACAAGAACATGTGAAAGCATCCCAAATGCTTGATCGTCTTCAGATTATTTTGGACGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGTCTAGCTCTGAGGTCAAAATCATGA 2343 0.4174 MLLMCGIPRYPPPYGTMVRPVFPPRPPGAVNIPPISRPPVAGIPTVRPIIPPVVRPMVAPSATPAEKPQNTVYIGKIASTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEHLERYVQKKAENLNKETQAGVVEKDEGEQTSSANEGTKAEKESSNKVDSESANKESHDVTNFGIVTDEDREGDREALEKITKMIEERLKTRPLPPPPAQPSGDGSVNLTSEQLVKTREGDSVDTEKNESAENKSEKETNSDKPSSERDRSESPDRRHDRKSRERDRDRELKREKERELERYEREAERERIRKEREQRRRIEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSAIEEKRKKRLREKEDDMLDKLKEEEEIAEAKKKAEEEQKRQRDALKLLTEHVVNGGNENMITEEVTDEVKSNVTEQDTIADYSREDHTGDGNALNVTSDELTIVAPTDTQGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTVPGPTPPNLAAAAEFAKRISSTNFKEDKLDGERDRSRRSNDKSNHRDRDRNDEDGTHNRDENKDRIPERDRDRDHVSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEETTLIDYIVSSTQEHVKASQMLDRLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01214 780 CDD RRM_RBM25 70 153 IPR034268 -
Viun2g01214 780 Pfam PWI domain 703 766 IPR002483 GO:0006397
Viun2g01214 780 SMART pwi_2 696 769 IPR002483 GO:0006397
Viun2g01214 780 Gene3D - 63 180 IPR012677 -
Viun2g01214 780 MobiDBLite consensus disorder prediction 267 353 - -
Viun2g01214 780 FunFam RNA Binding Motif protein homolog 659 775 - -
Viun2g01214 780 MobiDBLite consensus disorder prediction 167 224 - -
Viun2g01214 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Viun2g01214 780 Gene3D PWI domain 659 775 - -
Viun2g01214 780 MobiDBLite consensus disorder prediction 544 566 - -
Viun2g01214 780 Coils Coil 367 395 - -
Viun2g01214 780 MobiDBLite consensus disorder prediction 190 224 - -
Viun2g01214 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Viun2g01214 780 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 5 780 - -
Viun2g01214 780 MobiDBLite consensus disorder prediction 236 353 - -
Viun2g01214 780 Coils Coil 315 364 - -
Viun2g01214 780 ProSiteProfiles PWI domain profile. 683 780 IPR002483 GO:0006397
Viun2g01214 780 SUPERFAMILY RNA-binding domain, RBD 44 148 IPR035979 GO:0003676
Viun2g01214 780 SMART rrm1_1 71 144 IPR000504 GO:0003723
Viun2g01214 780 MobiDBLite consensus disorder prediction 518 589 - -
Viun2g01214 780 MobiDBLite consensus disorder prediction 602 661 - -
Viun2g01214 780 SUPERFAMILY PWI domain 701 768 IPR036483 GO:0006397
Viun2g01214 780 Coils Coil 416 463 - -
Viun2g01214 780 MobiDBLite consensus disorder prediction 369 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01214 Viun-Chr2 22882983 22888965 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01214 K12822 - gmx:100809428 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01214 2 22882983 22888965 Viun2g01214 2 22882983 22888965 ECH