Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01200 ATGCTATACTCTCTAATCCGTTTGCGCCGTTACGCTTGTCCGCATTCTCGGCTTCTTCGTCTTCCTATTAACCATTTCTCCTCCGCCGTTGCCGCCATGGTTGCTCACGCGAAGGACGACGCCTACCTTCAGGCGGCGATTCCGAAGCGCATCAAGCTGTTCGAGACTATTCAGGCGGAGCAGCGAACGCAGCGCCTCTCGCTCTCGCCGGATCCTATTAAAGTTACTCTTCCCGACGGCGGCGTGAGGGAGGCGAAGAAATGGCTCTCGACTCCGCTCGACGTGGCGCGCGAAATCTCTAAGAATTTGGCCAACAACGCGCTCATCGCCAAAGTCAATGGCGTGCTCTGGGATATGGCGCGCCCGCTTGAGGACGATTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGTCGCGACACGTTCTGGCACTCCAGCGCACACATACTCGGCCAGTCTCTTGAGACGGAGTATGGGTGCAAGCTCTGCATTGGACCTTGCACTACAAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGACTTGGGTCTCAATGACGATCACTTCAAGCAAATTGAAGCTGGCGCATTGAAGGCTGTTGCGGAAAAGCAACCGTTTGAGCGCATTGAAGTTACACGTGATCAGGCACTGGAGATGTTTTCTGATAATAAGTTTAAGATTGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACGGTATACAGATGTGGTCCCCTGGTTGACTTGTGTCGTGGACCCCATATTCCTAATACATCCTTTGTCAAAGCAATTGCATGTTTAAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATCGTGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATACTTGCATCGGCTGGAGGAGGCTAAAAAGTATGATCACCGGATTTTGGGTGTGAAGCAAGAGCTTATTCTTCATCATGAATGGAGCCCAGGAAGCTGGTTTTTTCTTCCACATGGTACTCGTGTCTACAACAAACTCATGGACTTCATTAGAAATCAGTACAAAGACAGGGGTTATCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTGTGGGTGCAATCTGGTCATGCTGCAAATTATAGAGAGGATATGTTTATTTTAGAGATTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGACACTGTCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTCCGTTTTGCTGATTTTGGAGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTGACACGTGTTCGGAGATTTCAACAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAACGCATTAAGTTTCATCAATTATGTCTATAACATATTTGGTTTCACATATGAGCTGAAGCTTTCAACGAGACCAGAGAAATACCTAGGAGATATTGCAACCTGGGATAAAGCTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGGGCATTCTATGGGCCAAAGATAGACATCAGTGTATCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACATAGAGCAATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCTTTCTGGCTCAGTCCTCGTCAAGCAATTGTATGTCCTGTGTCTGAAAAATCACAATCTTATGCACTACAGGTGAAAGATCAGATCCACCAAGCAGGATTTCACATTGATGCTGATACAACTGATAGGAAGATTCAAAAGAAGGTACGAGAAGCACAATTAGCACAATACAACTACATCTTGGTTGTCGGAGAGGAGGAAGCAAATACTGGACAGGTGAGTGTGCGAGTTAGAGACAAGGGAGATCATAACGTTATGAGTATAGAGAACCTACTTAAACATTTCAGAGACGAAGCTGCAGCTTACCATTGA 2124 0.4529 MLYSLIRLRRYACPHSRLLRLPINHFSSAVAAMVAHAKDDAYLQAAIPKRIKLFETIQAEQRTQRLSLSPDPIKVTLPDGGVREAKKWLSTPLDVAREISKNLANNALIAKVNGVLWDMARPLEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGTRVYNKLMDFIRNQYKDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALSFINYVYNIFGFTYELKLSTRPEKYLGDIATWDKAESALKEALDDFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVKDQIHQAGFHIDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKGDHNVMSIENLLKHFRDEAAAYH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01200 707 CDD TGS_ThrRS 73 138 - -
Viun2g01200 707 ProSiteProfiles TGS domain profile. 71 133 IPR004095 -
Viun2g01200 707 Hamap Threonine--tRNA ligase [thrS]. 138 705 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Viun2g01200 707 PRINTS Threonyl-tRNA synthetase signature 534 562 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Viun2g01200 707 PRINTS Threonyl-tRNA synthetase signature 433 456 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Viun2g01200 707 PRINTS Threonyl-tRNA synthetase signature 605 617 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Viun2g01200 707 PRINTS Threonyl-tRNA synthetase signature 400 428 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Viun2g01200 707 PRINTS Threonyl-tRNA synthetase signature 578 591 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Viun2g01200 707 CDD ThrRS_anticodon 610 700 IPR047246 -
Viun2g01200 707 CDD ThrRS_core 314 610 IPR033728 -
Viun2g01200 707 FunFam Threonine--tRNA ligase mitochondrial 1 294 422 - -
Viun2g01200 707 SUPERFAMILY TGS-like 73 133 IPR012676 -
Viun2g01200 707 FunFam Probable threonine--tRNA ligase, cytoplasmic 428 603 - -
Viun2g01200 707 Pfam TGS domain 73 133 IPR004095 -
Viun2g01200 707 Gene3D Bira Bifunctional Protein; Domain 2 296 603 IPR045864 -
Viun2g01200 707 SUPERFAMILY Class II aaRS and biotin synthetases 314 597 IPR045864 -
Viun2g01200 707 SUPERFAMILY Class II aaRS ABD-related 598 703 - -
Viun2g01200 707 Pfam Anticodon binding domain 612 701 IPR004154 -
Viun2g01200 707 Gene3D - 604 707 IPR036621 -
Viun2g01200 707 FunFam Threonine--tRNA ligase mitochondrial 1 604 707 - -
Viun2g01200 707 Gene3D - 71 132 IPR012675 -
Viun2g01200 707 FunFam Threonyl-tRNA synthetase, mitochondrial 137 294 - -
Viun2g01200 707 SUPERFAMILY ThrRS/AlaRS common domain 135 312 IPR018163 GO:0000166
Viun2g01200 707 PANTHER THREONINE-TRNA LIGASE 42 705 - -
Viun2g01200 707 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 339 605 IPR006195 -
Viun2g01200 707 SMART tRNA_SAD_4 241 290 IPR012947 GO:0004812|GO:0005524|GO:0043039
Viun2g01200 707 FunFam Threonine--tRNA ligase, cytoplasmic 71 132 - -
Viun2g01200 707 Gene3D - 136 294 - -
Viun2g01200 707 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 241 290 IPR012947 GO:0004812|GO:0005524|GO:0043039
Viun2g01200 707 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 394 600 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Viun2g01200 707 NCBIfam threonine--tRNA ligase 144 702 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01200 Viun-Chr2 22729645 22740437 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01200 K01868 - gmx:100812652 1357.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01200 2 22729645 22740437 Viun2g01200 2 22729645 22740437 ECH