Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01136 ATGGGACTTCTTCAACATCCCTTGTGTTGCAACTCACAGCAACAACAACCACAAAATCAAAGATCCTATGAACACTTCCATTCAGAACCATCAACCTCTTCTTCTCTCCATTCACAGCCAAGTCTTCCTTCAGTCCCTTCACTAAGTTCCCTCACCCCACAACAACCGCACAACCCCCAACAACAACAACCTCAAACCACCGTCAAAATCCACTCCTCCCCGATCTCCTCCCTCGTCCTCCACGGCAAACTCCTCTACAGCGCCGCCTCCAGCGGCGAGGTCAAAACATGCAGCAGAGACCCTTTCACCCTCCAAACCGACATCAACACCAACACCAACACCAATACCAACGTTGTCGTCGTTGCAACCACCAACGCGCCCATCAAGTCTCTCATCGTATACCACGACACGCTCTTCACCGCACATCAAGACCACAAAATCCGAGTCTGGAAAGCCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACGCTCCACGACCGTGTCTCCAAGCTATTCTCCTCCAAGAACTACGTCGAGGTGCGCCGCCACAAGAAACGCACGTGGGTGCATCACGTGGACGCCGTTTCCACCCTCGCGCTCTCCCACGACGGCTCCCTCCTCTACTCCGCTTCCTGGGACAGGACGTTCAAAATCTGGCGAACCTCGGACTTCAAATGTCTGGAGTCCGTGCAAAACGCGCACGAGGACGCGATTAACTCCTTGGTTTTGTCGAATGACGGCGCCGTCTACACGGGCTCCGCCGACACAAAGATAAAGATGTGGAAGAAGCGTGAGGGTGAGAAAAAGCATTCGCTCGTGGGGACGTTAGAGAAGCACAAATCCGCAGTTAACGCCCTGGCGCTTAGCGAAGATGGGTCGGTGCTGTATTCTGGCGCGTGTGACAGATCAATTTTGGTGTGGGAAAGTGATGATAATAATATGGTGGTGGTGGGGGCTTTAAGGGGACACACGAAGGCGATACTGTGTTTGGTGGTGATGGCGGATTTGGTGTGTAGTGGATCAGCTGATAACAGTGTTAGGGTATGGAGGAAAGAGATTGGAAAGGGTTATTCGTGTTTGGCGGTGTTGGAAGGTCATCGACGACCCGTGAAGTGTTTAGCTATGGCTGTTGACTCCAACACTGGTGGTGGTCCTCATGAAGATGATAGGTCTTATCTGGTTTACAGTGCAGGTTTGGACTGTGACATTAAAGTGTGGCAAATACGCGTTCCTTTGTTGTCACTGTAA 1251 0.522 MGLLQHPLCCNSQQQQPQNQRSYEHFHSEPSTSSSLHSQPSLPSVPSLSSLTPQQPHNPQQQQPQTTVKIHSSPISSLVLHGKLLYSAASSGEVKTCSRDPFTLQTDINTNTNTNTNVVVVATTNAPIKSLIVYHDTLFTAHQDHKIRVWKADQPTKCIATLPTLHDRVSKLFSSKNYVEVRRHKKRTWVHHVDAVSTLALSHDGSLLYSASWDRTFKIWRTSDFKCLESVQNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKREGEKKHSLVGTLEKHKSAVNALALSEDGSVLYSGACDRSILVWESDDNNMVVVGALRGHTKAILCLVVMADLVCSGSADNSVRVWRKEIGKGYSCLAVLEGHRRPVKCLAMAVDSNTGGGPHEDDRSYLVYSAGLDCDIKVWQIRVPLLSL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01136 416 Gene3D - 272 415 IPR015943 GO:0005515
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 350 - -
Viun2g01136 416 MobiDBLite consensus disorder prediction 7 71 - -
Viun2g01136 416 SUPERFAMILY WD40 repeat-like 58 409 IPR036322 GO:0005515
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Viun2g01136 416 SMART WD40_4 270 309 IPR001680 GO:0005515
Viun2g01136 416 SMART WD40_4 182 221 IPR001680 GO:0005515
Viun2g01136 416 SMART WD40_4 114 151 IPR001680 GO:0005515
Viun2g01136 416 SMART WD40_4 357 408 IPR001680 GO:0005515
Viun2g01136 416 SMART WD40_4 224 263 IPR001680 GO:0005515
Viun2g01136 416 SMART WD40_4 61 98 IPR001680 GO:0005515
Viun2g01136 416 SMART WD40_4 314 351 IPR001680 GO:0005515
Viun2g01136 416 FunFam BnaA09g28200D protein 179 267 - -
Viun2g01136 416 CDD WD40 67 408 - -
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 220 - -
Viun2g01136 416 MobiDBLite consensus disorder prediction 1 71 - -
Viun2g01136 416 Gene3D - 175 271 IPR015943 GO:0005515
Viun2g01136 416 Gene3D - 8 174 IPR015943 GO:0005515
Viun2g01136 416 Pfam WD domain, G-beta repeat 359 407 IPR001680 GO:0005515
Viun2g01136 416 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Viun2g01136 416 Pfam WD domain, G-beta repeat 187 220 IPR001680 GO:0005515
Viun2g01136 416 Pfam WD domain, G-beta repeat 273 308 IPR001680 GO:0005515
Viun2g01136 416 Pfam WD domain, G-beta repeat 319 350 IPR001680 GO:0005515
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Viun2g01136 416 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 21 410 IPR045182 -
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 272 IPR001680 GO:0005515
Viun2g01136 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 350 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01136 Viun-Chr2 22218036 22219530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01136 234 409 Miscellaneous Gene Families AT5G08390 25.000 2.02e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01136 - - vun:114174011 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01136 2 22218036 22219530 Viun2g01136 2 22218036 22219530 ECH