Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01134 ATGATATCTATCAAAATGAAGCCAAACCTTTGTGCATTCCTATTATTGTTCCTTCTCCTTCTGGACCAATCCCTTCCCGCGAAGGCTGGTTTTCTTAAAGGGTCCCAAAACGTATTCAAATCGTTCCTCAGGGGAAAATATCCCTCAAAATGGATTGTAGACGTCGTGGACATTTTGCTCAAACAAAACTTTTCTTCCCCACAACCAAACCAAACACCACAGCAAATCAAAGGCTTGTCTCAAATCAAAGAATACTTTTACAACTATGGCTACCTTCAATACTCTGACCCATTCGACGATTATTTGGACCAGCAAACAGTATTAGCCATCAGCACCTTCCAGCAAACTTTCAATCTCCAAGTTACCGGCGACCTAAACAACCAGACTTTACAACTAATCTCTCTACCACGATGTTATGTCCCCGACATCAATTTCACCTACGGCTTCACCCAAAACCTGTCGTGGCCCAAAGCCGGTAATCACTGGTTCCAAAAGAACAACCTCACCTACGGTTTTCTTCCCGAAAGTGAAATCCCCGACAATGCCACCAAAGTGTTCGAACAGGCATTCACGCGCTGGGCGAATGCCACAGGGCGTTTGAACCTCACCATGACAAACTACGATGACGCAGACATTAAGGTTGGTTTCTACATTTTCAATGTCAGCTTTGATGGCGACGTGTTTGGCTACAGCTTTATAAGGGAGGAACCTCCGTCTAACGTGAAGACGGCGGAGATACGTCTGAACGCGAACATGTTCTGGGCACTGCCCAGTGAAAATAACAGCTTGTCGTGGGAGGATGAAGTTCTGGACTTGGAGAGTGTGGCGATGCACGAGATAGGGCATTTACTTGGACTTGACCACTCTTTCGTAAATGACTCTGTTATGTACCCTTACATTTTGCCATCACAACAACGAAAGGTAGAACTCTCGAACGCCGACAAGAAAAACCTTCTGCAACAGAATGCTAACGTTGGCTCTGGCGGTGGTAGGTGTTTGGGAGTGCCTTCAGTCATCACTTTGTCTCTGGGATTTGTTTACATGCTTCTTATGTATTATTAA 1062 0.451 MISIKMKPNLCAFLLLFLLLLDQSLPAKAGFLKGSQNVFKSFLRGKYPSKWIVDVVDILLKQNFSSPQPNQTPQQIKGLSQIKEYFYNYGYLQYSDPFDDYLDQQTVLAISTFQQTFNLQVTGDLNNQTLQLISLPRCYVPDINFTYGFTQNLSWPKAGNHWFQKNNLTYGFLPESEIPDNATKVFEQAFTRWANATGRLNLTMTNYDDADIKVGFYIFNVSFDGDVFGYSFIREEPPSNVKTAEIRLNANMFWALPSENNSLSWEDEVLDLESVAMHEIGHLLGLDHSFVNDSVMYPYILPSQQRKVELSNADKKNLLQQNANVGSGGGRCLGVPSVITLSLGFVYMLLMYY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01134 353 PANTHER MATRIX METALLOPROTEINASE 65 318 - -
Viun2g01134 353 SMART col_5 158 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Viun2g01134 353 Pfam Putative peptidoglycan binding domain 79 132 IPR002477 -
Viun2g01134 353 Gene3D Collagenase (Catalytic Domain) 69 321 IPR024079 GO:0008237
Viun2g01134 353 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 161 318 - -
Viun2g01134 353 FunFam Metalloendoproteinase 5-MMP 71 326 - -
Viun2g01134 353 PRINTS Matrixin signature 275 300 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun2g01134 353 PRINTS Matrixin signature 186 201 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun2g01134 353 PRINTS Matrixin signature 133 146 IPR021190 GO:0004222|GO:0006508|GO:0008270
Viun2g01134 353 SUPERFAMILY PGBD-like 71 143 IPR036365 -
Viun2g01134 353 Pfam Matrixin 162 317 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01134 Viun-Chr2 22158059 22159345 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01134 - - vra:106780599 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01134 2 22158059 22159345 Viun2g01134 2 22158059 22159345 ECH