Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01121 ATGGCCACAAACACTCATTTCATCCTCACACTCCAACCACGTTACCCTTATTCTCCTTCTTCTTCTTCCTCTTCTTCTTTCCCATTTATTCTAACTAACACCGCTCTCTCTTTCTCTCACCTTCGCTTTGGATCTCTTCCTCTTTCCCTCAATTTCCGTGCCTCCTTCTCCTTCAAGTCCCCTACCTCAACCATTAGCGCATTCTCCGACGCCGAGGAGGACGAAGAAGAGGAAGAAGAGGACGAAGAAGACGATGAAGAAGAAGAAGAAGATGAAGACGACGATGTTGCTGCTGACGAGTACGACGACGTATCCGCTGATGCTTCCGAAGACGACGCCGGTGTGTTCGCTCGCCACGATGGATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTCAGGGAGTTCGGCGCGGATATCATCGACGTCGAAGAGCTGGCCGCTGTCTACGATTTTCGCATCGATAAGTTTCAGCGGCAGGCGATACTGGCCTTTCTGAGAGGCTCCTCGGTGGTGGTTTCTGCTCCGACGAGCAGCGGGAAGACGCTGATTGCGGAGGCCGCGGCGGTGGCTACGGTGGCTAGGGGACGGCGATTATTCTACACGACGCCGCTCAAGGCGTTGTCCAATCAGAAGTTTCGCGAATTCCGTGAGACTTTTGGTGACAGTAATGTTGGCCTTCTTACGGGTGATTCTGCTGTGAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGGAAGCTGTCATTCAATTATTTACAACTTCAAGCTGCAGGAGCTAAACCTTACAAAGATGATTGGTCTCGAAAAAGGAACTCTCGGAAACGTGGAACACGCTTTAGCTATGATAGTGATGATAACATGTTTGAACAACGTTCTCTTTCAAAGAATGACATAAATGCCATACGTCGATCACAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCCATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTTGAAAATTGCAAACTTTTAGATGAGTGTGAATCAACTGAGGTCGAACTAGCCTTGAAGAAGTTCCGCAAGCAGTATCCTGATGCTGTCAGAGACTCAGCTGTAAGAGGACTTTTGCAAGGGGTTGCCGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGCTGTTTCAAAGAGGACTTATTAAAGTTGTTTTTGCTACAGAAACCCTGGCTGCTGGAATCAATATGCCTGCCAGAACAGCTGTTATTTCATCTCTCAGCAAAAGGGGTGACAGCGGGCGTATACCATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAAAGTGGTCATGTAGTTCTCATCCAAACCACTAATGAAGGTGCTGAGGAGGGCTGCAAAGTTCTGTTTGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCAATGGTCAAATGAATCAGGTAACATGAAACCTTCCACGGGAAGAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAGAGTTTTGGGAATTATGTTAGTAGCAATGTAATGCTGGCTGCTAAAGAGGAACTTAATAAAATTGAGAAAGAAATCGAGTTGCTTATGTCAGAAACTACTGATGAAGCTATAGATAGAAAAACCAGGAAGGCCTTAGCACCACGGCAATACAAGGAAATTGCAGAATTACTGGAAGATTTAAGATCAGAAAAGCGTGTTCGGACTAAGTTGCGCAAACAGGTGGAAGCAAAGAGAATGTCTGCCCTGAAACCTTTGTTGGAGGAGACAGAAAGTGGACATTTGCCATTTTTATGCTTGCAGTATAGAGATGCTGAAGGAGTTGAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCTAAACTCAAAACTATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGAAGCAGAGCCAAGTGTTGCAGATTCTGCACTGAATAAAGATATTAAACCTTCATACCATGTGGCTCTTGGTTCAGATAACACTTGGTATCTATTTACGGAAAAGTGGATTAAGACAGTATATGGGACAGGCTTTCCTAATGTTCCATTGGCTCAAGGGGATGCTCGACCTCGAGAAATTATGAGCACTCTCCTTGATAACGGTGATATGAATTGGGATAAGCTTTCTCAATCTGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTTGATACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTGTCGGAAAATGACGAGCTACTACTGAAGTCTCAAGATTACAAAGATGCCATTGAATGTTACAAAGATCAAAGAAATAAAGTTTCACGGTTGAAGAAAAAGATATCTCGTAGTGAAGGCTATAAAGAATATTTTAAAATTACAGACACAGTCAAGTTTGTTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATTGAACAGATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATTCATGAAATCAGGGCTTTAGATATTAATACACATGTCATATTTCCACTTGGTGAAACCGCTGGTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTACTAGATCTAAAACCTGCGCAGCTCGCTGCAGTGTGCGCAAGTTTGGTGTCCGTGGGTATCAAAGTTCGACCCTGGAAAAATAACAGTTACATTTATGAGCCTTCTGCAACTGTAACGAAGTTCATAACATTATTAGATGAACAAAGAAATGCCTTATTGGCATTGCAGGACAAACATGGGGTGACAATCTCTTGCTGTTTGGATAACCAGTTTTGCGGCATGGTTGAGGCCTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGACTGTGCAATGGATGATGGCGATTTAGCTCGTCTCCTTCGCCGGACCATTGATCTGTTAGTTCAGATTCCAAAGTTGCCAGACATTGATCCATTGTTGCAGCGCAATGCAAAGGCTGCTTCTGCTGTTATGGACCGGCCTCCAATAAGTGAACTTGTGGGGTAA 3201 0.4396 MATNTHFILTLQPRYPYSPSSSSSSSFPFILTNTALSFSHLRFGSLPLSLNFRASFSFKSPTSTISAFSDAEEDEEEEEEDEEDDEEEEEDEDDDVAADEYDDVSADASEDDAGVFARHDGFKWQRVEKLCNEVREFGADIIDVEELAAVYDFRIDKFQRQAILAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQRKLSFNYLQLQAAGAKPYKDDWSRKRNSRKRGTRFSYDSDDNMFEQRSLSKNDINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLENCKLLDECESTEVELALKKFRKQYPDAVRDSAVRGLLQGVAAHHAGCLPLWKAFIEELFQRGLIKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNELLQMAGRAGRRGIDESGHVVLIQTTNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIQWSNESGNMKPSTGRTLEEARKLVEQSFGNYVSSNVMLAAKEELNKIEKEIELLMSETTDEAIDRKTRKALAPRQYKEIAELLEDLRSEKRVRTKLRKQVEAKRMSALKPLLEETESGHLPFLCLQYRDAEGVEHSIPAVFLGKVDSLNASKLKTMISSVDSFALNLAEAEPSVADSALNKDIKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLAQGDARPREIMSTLLDNGDMNWDKLSQSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLKSQDYKDAIECYKDQRNKVSRLKKKISRSEGYKEYFKITDTVKFVEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHVIFPLGETAGAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSVGIKVRPWKNNSYIYEPSATVTKFITLLDEQRNALLALQDKHGVTISCCLDNQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLQRNAKAASAVMDRPPISELVG 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01121 1066 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 515 IPR001650 -
Viun2g01121 1066 Coils Coil 600 620 - -
Viun2g01121 1066 Coils Coil 797 817 - -
Viun2g01121 1066 MobiDBLite consensus disorder prediction 64 97 - -
Viun2g01121 1066 Coils Coil 844 864 - -
Viun2g01121 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 263 IPR014001 -
Viun2g01121 1066 Gene3D - 116 266 IPR027417 -
Viun2g01121 1066 MobiDBLite consensus disorder prediction 69 97 - -
Viun2g01121 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 483 IPR027417 -
Viun2g01121 1066 Gene3D - 279 498 IPR027417 -
Viun2g01121 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 259 IPR027417 -
Viun2g01121 1066 SMART ultradead3 151 320 IPR014001 -
Viun2g01121 1066 Coils Coil 558 578 - -
Viun2g01121 1066 CDD SF2_C_Ski2 313 481 - -
Viun2g01121 1066 Pfam DSHCT (NUC185) domain 895 1061 IPR012961 -
Viun2g01121 1066 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 291 1061 - -
Viun2g01121 1066 SMART helicmild6 383 469 IPR001650 -
Viun2g01121 1066 Coils Coil 68 92 - -
Viun2g01121 1066 Gene3D - 846 1058 - -
Viun2g01121 1066 SMART DSHCT_2 891 1065 IPR012961 -
Viun2g01121 1066 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 848 1058 - -
Viun2g01121 1066 Pfam DEAD/DEAH box helicase 158 264 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01121 Viun-Chr2 22040878 22048652 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01121 K26077 - gmx:100780908 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01121 2 22040878 22048652 Viun2g01121 2 22040878 22048652 ECH