Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01052 ATGTCTACCGTTGCATTAGAACCTCTCTTCCACCTTTGCTCCAGAAAACCTTCGTTTCATAGCCATAAACCAATCCCACTGAGACCCTTCTTTCTTCCCACGTGCTCCTCCAATCTCAATGATGCATCCTTCATCTTTCACCACCAACCTCGTAGGACTCTCTCTCCCCTGCATGCTGCTTCAGTTACAGACACACCTACTCTCCATCCTCTTCAATGCCCTCAGACCATCACCTACACTTTCGCAATCGACCGAACCCAAATGGCGAAGGGAAAGGTGTTTGTGAGATTAGATCACGGAAAGGATTTGAAGGATTGGGAGCTTACGGTGGGTTGCAGTCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCTTGTTCAAGATGTTGGAAGGGAATGGGATCAACCTCCTCTTGATATGATACCCCCTGGATCTGTTCCTATAAAGGACTATGCAGTAGAGACCCCTTTGAAGAACTCATCCTTATCTGCAGAAGGAGATACGCTTCACGAAGTCAGGATTGATCTAAAAGCTAAATTTGGAATTTCAGCTATTCATTTTGTTCTCAAGGATGAGGAAACTGGAGATTGGTACAAAAACGAAAGTAGAGATTTCGTGGTTTCTTTGGTGGACTGCATTAAGGAGGATTCGGATACAAGTATAATTGAACCTAAAAGAGGCTTTGATTTTTGGCCAGGGAATTTGGGGCAATTATCTAGAATGTTCTCCGGGTTAAAAGCTGACGAAAATAAAAGAAGTGAATCCAGAGTTCCAGAAGGAGAAAACAATCAACCAGAAGGTTTCTATGAGGAAGTGTATGTAACAAAGAAGGTTTTAGTTAGTAACTCTATCAGTGTCTCCACCAAGAAATGCTTTGAGTCTGGGGCAGTTAAGGACATTTTATATTTTGAAACTGATCTACCTGGAGATGTTGTCCTTCACTGGGGAGTTTGTAGGGATGATTCAAGAAGGTGGGAAGTTCCACCTCCTCCTCATCCACCAAGCACAGTACCATTTAAAGACAGGGCTTTGAGAACTCAATTATGGCCAAGACACGATGGAAAAGGATCTTCAGTACAAATCACTTTAGATGAAGAATTTTCAGGATTTGTTTTTGTTATTAAGCAAAATGAAAATACTTGGTTCAAGTACTTGGGGAATGACTTTTATGTTCCCCTCTCAAGTTCTAGCAACTTGCCTAATATTGGCAACAAAGAGGATCTGTCAGAAGGTGTGCAGATTGAAAAGCCCAGTCAACAAAATTCTTTCTCTGCATTTACTGATACAGTAGCCTATGAAATAAGAAATTTGGCCACAGACAACTCCTCTGAGAAGAAACAAGAGAAAAAATCTAAAAAGGTTCGACAAAGCATTTTTGAAGAAATTGAAAGGCTGGCTGCTGAAGCCTATAATATATTCAGGAACTCCATTCCAGGTTTCTCTAAGCCAACTATTGCAGAACCGGAAGTAACTAAAGTGGAACCTGAGAATACTGTTGCAGTACCCGAGAAAACTTTTGTGGAACCTGAGAAGACTGTTGTGGAAGCAACTAATGTTGCAGAGACACTGTCCCTGGAGCCAAAAATATGCTCAGCGACAGGCACAGGGTATGAAATATTATGCCAAGGATTTAACTGGGAATCTCATGCATCTGGAAGATGGTACATGAAGCTTAAAGAGGTAGCTTCAGAATTAGCATCAATTGGTTTCACTGTGATCTGGTTACCACCCCCTACAGAGTCTGTTTCACCTCAAGGATACATGCCAAAGGATTTGTATAATTTAAATTCCAGATATGGAAACATGGATGAACTCAAATATTTGGTGAAAAAATTTCATGAAGTTGGAATCAAAGTTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCACATTATCAGAATAAGAATGGTGTTTGGAACATATTTGGAGGCTATCTTGACTGGGATGATAGTGCAGTTGTTTCAGACGATCCACATTTTCAGGGTAGGGGCAACACGAGTAGTGGAGATAGTTTTCATGCTGCTCCAAACATTGATCATTCACAGGAGTTTGTGAGAAAAGATCTCAAAGAATGGTTATGCTGGTTGAGGAAAGAAATTGGATATGATGGATGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATAGAGGCAAGTGAACCTTATTTTTCTGTGGGAGAGTACTGGGATTCTCTCAGTTATACAAATGGTGAAACTGATCATAATCAAGATGCTCATAGGCAGAGGATAATTGACTGGATCAATGCTACAAATGGTACCTCTAGTGCATTTGATGTGACAACAAAAGGGATTCTTCACACTGTACTGGAAAAATGTGAATATTGGAGATTGTCAGATGAGAAGGGAAAGCCTCCAGGTGTTATTGGATGGTGGCCTTCTCGTGCTGTTACCTTTATAGAGAATCATGACACTGGTTCTACGCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGACAGGATATGCTTACATTCTTACTCACCCAGGAACCCCATCAGTCTTTTATGACCACATTTTCTCTCACAACAAAACTGAAATAGCAAGTCTGATATCTCTCAGAAAGAGGAACGGGATCCACTGCAGGAGTACAATTCAAATTAGCAAAGCAGAAAGGGATGTTTATGCAGCCATCATTGATGAAAAAGTTGTTGTGAAGATCGGACCAGGACATTTTGAGCCACCAAGAGGCTCCCTGAAATGGTCATTAGCTATTAAGGGAAAAGACTACGAAATTTGGGAAGCATCACAACCATAG 2799 0.4123 MSTVALEPLFHLCSRKPSFHSHKPIPLRPFFLPTCSSNLNDASFIFHHQPRRTLSPLHAASVTDTPTLHPLQCPQTITYTFAIDRTQMAKGKVFVRLDHGKDLKDWELTVGCSLPGKWILHWGVTLVQDVGREWDQPPLDMIPPGSVPIKDYAVETPLKNSSLSAEGDTLHEVRIDLKAKFGISAIHFVLKDEETGDWYKNESRDFVVSLVDCIKEDSDTSIIEPKRGFDFWPGNLGQLSRMFSGLKADENKRSESRVPEGENNQPEGFYEEVYVTKKVLVSNSISVSTKKCFESGAVKDILYFETDLPGDVVLHWGVCRDDSRRWEVPPPPHPPSTVPFKDRALRTQLWPRHDGKGSSVQITLDEEFSGFVFVIKQNENTWFKYLGNDFYVPLSSSSNLPNIGNKEDLSEGVQIEKPSQQNSFSAFTDTVAYEIRNLATDNSSEKKQEKKSKKVRQSIFEEIERLAAEAYNIFRNSIPGFSKPTIAEPEVTKVEPENTVAVPEKTFVEPEKTVVEATNVAETLSLEPKICSATGTGYEILCQGFNWESHASGRWYMKLKEVASELASIGFTVIWLPPPTESVSPQGYMPKDLYNLNSRYGNMDELKYLVKKFHEVGIKVLGDAVLNHRCAHYQNKNGVWNIFGGYLDWDDSAVVSDDPHFQGRGNTSSGDSFHAAPNIDHSQEFVRKDLKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYIEASEPYFSVGEYWDSLSYTNGETDHNQDAHRQRIIDWINATNGTSSAFDVTTKGILHTVLEKCEYWRLSDEKGKPPGVIGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMTGYAYILTHPGTPSVFYDHIFSHNKTEIASLISLRKRNGIHCRSTIQISKAERDVYAAIIDEKVVVKIGPGHFEPPRGSLKWSLAIKGKDYEIWEASQP 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01052 932 CDD AmyAc_arch_bac_plant_AmyA 540 879 - -
Viun2g01052 932 Gene3D - 873 929 IPR013780 -
Viun2g01052 932 SMART aamy 539 868 IPR006047 GO:0005975
Viun2g01052 932 Pfam Alpha-amylase C-terminal beta-sheet domain 870 928 IPR012850 GO:0004556|GO:0005509|GO:0005975
Viun2g01052 932 Pfam Alpha amylase, catalytic domain 566 849 IPR006047 GO:0005975
Viun2g01052 932 SUPERFAMILY (Trans)glycosidases 538 856 IPR017853 -
Viun2g01052 932 PANTHER ALPHA-AMYLASE 513 931 - -
Viun2g01052 932 Gene3D Glycosidases 539 872 - -
Viun2g01052 932 SMART alpha-amyl_c2 869 929 IPR012850 GO:0004556|GO:0005509|GO:0005975
Viun2g01052 932 SUPERFAMILY Glycosyl hydrolase domain 873 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01052 Viun-Chr2 21341232 21348133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01052 1 930 Glycoside Hydrolase AT1G69830 57.354 0.0 1076
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01052 K01176 - gmx:100810333 1508.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01052 2 21341232 21348133 Viun2g01052 2 21341232 21348133 ECH