Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01018 ATGTTGGACGGTCGTTCGTGCGTTGTTCCGAGGTTGTTTTCCAGCACTTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGAAAGCGCCCTATGGAGATTGATGATGTCGAGGATGAGCCCCAGCAGCCGAGGAAGTGTACTAGGAAGTTGGATTCTTACAATAGAGTTGAAATGGCTCGAATTTCCTTTCAGAGGCAATCTATTGAGGCCAAGGATTCCGTCGTTTCCCAGATGGATCAGGAGACTATTGAGCCATTGAACGTTTGTGAAGGAGTTGTCGGAGAAGGTGGAGCTTTGACCGACCGGCGGCTACTGGGTGAGCAAGAACATGAGGAGGGTGATGGTGATTTGATGGATGTTGGTGACCATCAATCCGATGGACAGCATCAGGCTAAGCCTGGGGATTTATCAGATGAACACCGGTTGCAGCATGATGAGAATCTAATGAATTCAAGTGAGCAGCAATCTGAGCAGCAGCAGCAGCAGCATGGTGGGGATTCTTCAGATTCCGGTTCTCTCTTGCCACGCATGAACCGTGACAGCTCAATCGCGTGTCTCAGCCGGTGTTCAAGGTCAGACTACGGTTCTCTAGCCTCGCTGAATAGGAGCTTCCGGAACATAATCCGAAGTGGTGAACTCTACCAATGGAGGAGACTAAATGGGATTATGGAGCACTGGATTTATTTTTCCTGCGCCCTTCTGGAATGGGAGGCCTATGATCCAATCCGTCAGAGATGGATGCATTTGCCAAGAATGGCTTCTAATGAATGCTTCATGTGTTCAGACAAGGAATCTTTAGCTGTAGGAACCGAGCTACTTGTGTTTGGGAGGGAGCTAAGGTCTCATGTGATTTACAGATACAGTCTGTTGACAAACTCATGGACATCTGGAATGAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGTCTTGGAGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTTGACTCTGCTGAATTATACAATTCCGAGACTCAAACATGGGAAACACTGCCAAGTATGAAGAAACCCAGGAAAATGTGTTCTGGGGTGTTTATGGATGGAAAGTTTTATGTGATAGGGGGGATTGGGGGGAGTGATTCAAGGGTGCTAACATGTGGAGAGGAGTACAATGTTCAGAGCAGAACATGGACAGAGATTCCAAACATGTCCCCGGGAAGAAGTAGTAGGGGTCCTGAGATGCCTGCAACGGCTGAGGCACCACCTTTGGTTGCAGTTGTAAATGATGAACTTTATGCTGCTGATTATGCTGACATGGAGGTTAAGAAGTATGACAAGGAAGAAAAAGTGTGGATTAGCATTGGGAGATTGCCAGAACGAGCGGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCGTGTGGAGATAAGCTTATTGTGATTGGTGGACCAAGGACTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGTGCCTAGTGCAGGGCCTCCACACTGGGATCTACTTGCTAGGAAACGTTCTGGCAATTTTGTCTATAATTGTGCTGTCATGGGATGTTGA 1593 0.4758 MLDGRSCVVPRLFSSTCQAENDWSYMKCLLELDIKNGKRPMEIDDVEDEPQQPRKCTRKLDSYNRVEMARISFQRQSIEAKDSVVSQMDQETIEPLNVCEGVVGEGGALTDRRLLGEQEHEEGDGDLMDVGDHQSDGQHQAKPGDLSDEHRLQHDENLMNSSEQQSEQQQQQHGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWTSGMRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWETLPSMKKPRKMCSGVFMDGKFYVIGGIGGSDSRVLTCGEEYNVQSRTWTEIPNMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKEEKVWISIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSAGPPHWDLLARKRSGNFVYNCAVMGC 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01018 530 Pfam Kelch motif 313 358 IPR006652 GO:0005515
Viun2g01018 530 Pfam Kelch motif 361 408 IPR006652 GO:0005515
Viun2g01018 530 MobiDBLite consensus disorder prediction 122 147 - -
Viun2g01018 530 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 174 530 - -
Viun2g01018 530 MobiDBLite consensus disorder prediction 159 184 - -
Viun2g01018 530 SUPERFAMILY Kelch motif 243 518 IPR015915 GO:0005515
Viun2g01018 530 Coils Coil 152 172 - -
Viun2g01018 530 SMART kelc_smart 281 324 IPR006652 GO:0005515
Viun2g01018 530 SMART kelc_smart 325 372 IPR006652 GO:0005515
Viun2g01018 530 SMART kelc_smart 373 433 IPR006652 GO:0005515
Viun2g01018 530 Gene3D - 229 507 IPR015915 GO:0005515
Viun2g01018 530 FunFam F-box/kelch-repeat protein SKIP11 229 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01018 Viun-Chr2 20966804 20970013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01018 190 406 EF-hand Containing Proteins AT4G39560 25.346 1.70e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01018 - - gmx:100820308 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01018 2 20966804 20970013 Viun2g01018 2 20966804 20970013 ECH