Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03557 ATGGTGATGAGTTTATCATTTTCTTTGGTGACAGTAAAGCCTTATTCCATGAGTGTGAGCAATAAGAAAGCATGTCGTAGCCGAAGAAGATTTAGTGTTACAAGGGCAGAAATAACCGTGGCTCCCAATCCCCAACAAAGAAGGCAATTATCGAAGCAAGGATTTCCTCTAACGGATTTACACGTACAAGAGGTTGTTCACAGGCAGTCTCAAATTATTAGTCCTTGTAGCAAGCCTAAGCTACAGTTTCATTCAAATTTTCTGAATGACGCCTATGAAATGTGCAGAAATATCTGCGCCGAATACGCGAAGACCTTCTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTCTGGTGCAGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCTGCGTATATGAGCTCTGCTGTTCTTGATAGATGGGAAGATAGACTGCACGACATTTTCAACGGACATCCCTATGATATGCTTGATGCCGCTCTTACTGATACCCTCTCCAAGTTTCCCTTGGATATCAAGCCTTTCAGAGACATGATACAAGGAATGAGAATGGATACGAGGAAAGCTCGCTACAACAATTTCCAAGAGCTATATCTTTACTGTTACTATGTGGCGGGAACCGTTGGCTTAATGACTGTTCCAATAATGGGTATCGCACAGGAGTCGGTTGTCCCTGTACAAAGTGTATACGATGCTGCTCTATATCTGGGTATAGGAAATCAACTCACCAACATTCTTAGAGATGTCGGAGAGGATGCATTAAGAGGTAGAGTGTATCTTCCCCAAGACGAACTAGCCCAGTTTGGATTATGTGACAAGGATGTGTTTTCAAGAAATGTGAGTGAAAGATGGAGAAAGTTTATGAAACATCAAATTACGAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTTGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCATTAATATTGTATCGTAAGATCCTAGATGCAATTGAAGACAACGACTACGACAATTTGACTAAACGAGCTCACGTGGGACGAGCTAAGAAATTTTTTACGTTGCCTCAAGCTTACACTAGATCTCTTTCAAATCACAAAACGAAATTTCGACCTTCATTGACAAGGCATATTTAG 1164 0.4227 MVMSLSFSLVTVKPYSMSVSNKKACRSRRRFSVTRAEITVAPNPQQRRQLSKQGFPLTDLHVQEVVHRQSQIISPCSKPKLQFHSNFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAAYMSSAVLDRWEDRLHDIFNGHPYDMLDAALTDTLSKFPLDIKPFRDMIQGMRMDTRKARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVVPVQSVYDAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRNVSERWRKFMKHQITRARFYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAHVGRAKKFFTLPQAYTRSLSNHKTKFRPSLTRHI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03557 387 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 30 373 - -
Viun1g03557 387 CDD Trans_IPPS_HH 93 360 IPR033904 GO:0004311
Viun1g03557 387 FunFam Phytoene synthase chloroplastic 83 366 - -
Viun1g03557 387 Gene3D Farnesyl Diphosphate Synthase 83 369 IPR008949 -
Viun1g03557 387 Pfam Squalene/phytoene synthase 102 357 IPR002060 GO:0009058
Viun1g03557 387 SUPERFAMILY Terpenoid synthases 90 373 IPR008949 -
Viun1g03557 387 SFLD Phytoene synthase like 89 372 IPR044843 GO:0004311
Viun1g03557 387 ProSitePatterns Squalene and phytoene synthases signature 2. 246 271 IPR019845 GO:0016765
Viun1g03557 387 SFLD Squalene/Phytoene Synthase Like 89 372 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03557 Viun-Chr1 41972128 41974550 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03557 K02291 - gmx:100782394 657.136