Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03556 ATGTGCACGGTGTCAGGCTCTATCTTTCTGCTTCTGTGCTGTCCTTCATCTTCTTCTTCTTCAATATCACTTGTTTGTTGTTATTCCAATACCATAGCCAAAAGGAGGGTTGGCAATGGCATAAGCCATTTAAGTGCAGCCACCGCCACTTGTGCTATGGCTAAAGATGTGTGGAGCCGAACATGTGGATCTTCATCTTCCTCTCCTATTCCCAGGGAAAGTGGTAGCAGAAGGCAACAACAAGGTACGTGCTTGGACCGCAGTGTGGACATGGAAGAGCTATTAGCGGCAATTGGGGAGACCCAGAACGAGGATGAACTGTATGCGGTGATGTCCCCCTACAGCGGGAGGCAGCTGTCTATGCGCTTCATGGTTTCCCTGCTCTCCCGCGAGCCCGATTGGCAACGCACCCTTGCCCTTCTCGATTGGATAAACGAAAAGGCCCTCTATTCCCCCTCCCTATTCGCCTACAACGTCGTCCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCCCACGGCCTGTTCGACGAAATGCGCCACAAGGGCCTTTCCCCCGATAGGTACACCTACTCCACCCTCATCACTTCTTTCGCCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTTCCGGCGACCTTGTCCTCTACAGTAATTTGATCGACCTTGCCCGCAAGTTGTGCGATTACTCCAAGGCCATTTCCATCTTCACCAGATTGAAAGCCTCCACCATTACCCCCGACCTCATTGCCTATAACTCCATGATCAATGTATTTGGAAAAGCCAAGCTCTTCCGCGAGGCCCGCCTTCTTCTCCAAGAGATGGCCGACAATGGTGTTCAACCCGACACCATCAGCTATTCCACGCTTCTTGCCATCTACGTTGACAATCAAAAGTTTGTTGAAGCGCTTTCTCTGTTCTCTCAAATGAATGAATCCAAATGCCCGCTTGATCTCACCACCTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCGGATCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAATGTGGTTAGCTACAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGGGAAGCCATCCATCTGTTTCGCTTGATGCAGAGTAAAGATGTACCGCAGAATGTTGTCACTTACAACACTATGATTCATATCTATGGCAAGACCCTTGAGCACGAGAAAGCTACCAATCTCGTTCAAGAAATGAAGAAAAGGGGTATAGAACCGAATGCCATCACTTACTCCACCATAATATCCATTTGGGAAAAGGCAGGCAAACTGGACCGCGCAGCTATCTTGTTTCAAAAATTAAGGAGTTCAGGGGTACGAATTGACGAGGTTCTTTACCAGACAATGATTGTGGCCTACGAGAGGGCAGGTTTAGTTGCTCATGCCAAGCGTCTGCTGCATGAGCTGAAGAGACCGGACAACATTCCGAGGGAGACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTTCGTCAGGCTTTTGATACTGGAGAAGTCAAAGATATATCTGTATTTGGGTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATAGCAATGTCGTTGAAGTGTTTGAGAAGATGAGACAGGTTGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCAGATGCTTTATATAGACAGATGCACCAGGAAGGGTGTGTTTTTCCAGACGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAGGATTTCATGATGGTAGAGTCATTGTTTGAGAAGCTAGATTCGAATCCTAATGTCAATAAGAAGGAGTTGCATCTCGTTGTTGCTAGCATTTTTGAGCGAGCAGATAGACTAAATGATGCTTCCCGAGTCATGAATAGGATGAACCAAAGAGCAATCAGAAGTCACGATCATACTTAG 2034 0.4695 MCTVSGSIFLLLCCPSSSSSSISLVCCYSNTIAKRRVGNGISHLSAATATCAMAKDVWSRTCGSSSSSPIPRESGSRRQQQGTCLDRSVDMEELLAAIGETQNEDELYAVMSPYSGRQLSMRFMVSLLSREPDWQRTLALLDWINEKALYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRHKGLSPDRYTYSTLITSFAKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLCDYSKAISIFTRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMADNGVQPDTISYSTLLAIYVDNQKFVEALSLFSQMNESKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKDVPQNVVTYNTMIHIYGKTLEHEKATNLVQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRIEEATWVFRQAFDTGEVKDISVFGCMINLFSKNKKYSNVVEVFEKMRQVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHQEGCVFPDEVHFQMLSLYGARKDFMMVESLFEKLDSNPNVNKKELHLVVASIFERADRLNDASRVMNRMNQRAIRSHDHT 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Viun1g03556 677 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 119 497 - -
Viun1g03556 677 Pfam PPR repeat family 257 301 IPR002885 -
Viun1g03556 677 Pfam PPR repeat family 328 372 IPR002885 -
Viun1g03556 677 Pfam PPR repeat family 152 201 IPR002885 -
Viun1g03556 677 Pfam PPR repeat family 398 442 IPR002885 -
Viun1g03556 677 Gene3D Tetratricopeptide repeat domain 499 677 IPR011990 GO:0005515
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Viun1g03556 677 Gene3D Tetratricopeptide repeat domain 101 235 IPR011990 GO:0005515
Viun1g03556 677 Gene3D Tetratricopeptide repeat domain 236 343 IPR011990 GO:0005515
Viun1g03556 677 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 343 501 - -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Viun1g03556 677 SUPERFAMILY HCP-like 212 427 - -
Viun1g03556 677 Gene3D Tetratricopeptide repeat domain 427 498 IPR011990 GO:0005515
Viun1g03556 677 Gene3D Tetratricopeptide repeat domain 353 426 IPR011990 GO:0005515
Viun1g03556 677 MobiDBLite consensus disorder prediction 64 83 - -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Viun1g03556 677 Pfam PPR repeat 576 601 IPR002885 -
Viun1g03556 677 Pfam PPR repeat 470 497 IPR002885 -
Viun1g03556 677 Pfam PPR repeat 537 565 IPR002885 -
Viun1g03556 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 576 605 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 400 434 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 331 364 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 261 294 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 156 188 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 537 569 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 190 223 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 365 396 IPR002885 -
Viun1g03556 677 NCBIfam pentatricopeptide repeat 295 328 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03556 185 671 Glycosyltransferase AT1G05670 20.892 1.46e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03556 - - gmx:100782934 1146.72