Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03549 ATGGTTTCGAAAAGTAAAAGGGTGAGGGATGCAACACTCTTCTCCTTCATCTTGGTTTTACTGTTAGTTGGGTTTGGTAACTCAGATTTAAGCAAAGACAGAGAAGAGTGTGCAGAGAAACTCATGGGGCTGGCTAGTTGTGTTCCTTACGTTGGTGGTGAGGCGAAAACCCCAACCATAGACTGCTGCAGTGGCCTGAAAGTGGTCCTGGAGAAGAGCAAGAAGTGCATCTGCATCCTCATCAAAGATCGTGATGACCCCAATCTTGGCATCAAAATCAATGCCACTCTCGCCATTCAACTACCCTCTGCTTGCCACGCACCTGCTAATATATCTCACTGTGTAGATCTTCTGCATTTAGCACCTAACTCTCCTGATGCTAAGGTGTTTGAGGGATTGCAAAAATCTGCCAAAACAAACGGTTCCACCCCAGTTTCCAGTGGATCAAGCTCAAGTGCTGAGGAAAACAGTGGTGTGTCTACAAAGAGGTGGCCGGTGCCACACCTGCTTTCCTCGATCTTACCACTTCTCTTCCTTCTTGTTTGA 546 0.4689 MVSKSKRVRDATLFSFILVLLLVGFGNSDLSKDREECAEKLMGLASCVPYVGGEAKTPTIDCCSGLKVVLEKSKKCICILIKDRDDPNLGIKINATLAIQLPSACHAPANISHCVDLLHLAPNSPDAKVFEGLQKSAKTNGSTPVSSGSSSSAEENSGVSTKRWPVPHLLSSILPLLFLLV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03549 181 SMART aai_6 37 114 IPR016140 -
Viun1g03549 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 115 IPR036312 -
Viun1g03549 181 CDD AAI_LTSS 44 106 - -
Viun1g03549 181 MobiDBLite consensus disorder prediction 138 159 - -
Viun1g03549 181 MobiDBLite consensus disorder prediction 138 160 - -
Viun1g03549 181 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 34 114 - -
Viun1g03549 181 Pfam Probable lipid transfer 32 114 IPR016140 -
Viun1g03549 181 Gene3D - 34 114 IPR036312 -
Viun1g03549 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 24 151 IPR043325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03549 Viun-Chr1 41954878 41956457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03549 12 179 Acyl Lipid Metabolism Gene Families AT1G55260 48.000 3.11e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03549 - - pvu:PHAVU_001G268300g 276.559