LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g03545	ATGAGTGCAGAGATTGATTCAACTTCTGCTCCTGAACCTCATAAAATGTCTGGAACTTCATCAGTAACAACCACTAGTGGCCAAAAGCTGTCTATATTTGCTGCCAAATCAGGGTTTGTCATCCCTAAAAACAAATTGTCGGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAACACGGGGTCACTGGAGCCATCAATGAAGAAAGTTCAAAACAAACTGAGAGGAAATCAAAATGGGGACCTGATCTTACACAGGATGCAACTGTCAGGAGGGGAAAAGCTCTAGCATTGCAGATTCGAGTGGATCAAATCACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGCCATTGGGAGCTGAGAACACGGATAAAAGCAAATCTGGCTCTCAAATGAACATCAAGTCAGAAATGCTCGAACTTGAAAAGCGCGAAGCCATAGGCGAAATACTAAAATTAGATCCCAGTTACAAACCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTTCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGGCCTGAAGGTGATAATCAGAAACAACTAGAAAAGGAAACTGCTGCCAAGATAAAAATTCATGGAACCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAGCCTGGAACTGATATCCATTCCAGTTACAAGGAGATGTGTGTTAACATATCAGCTGATAGTTTTGAAAAAGTGGATGCAGCAATGTCAATAATTGAACTGCTGATTACCTCTGTAACTGGGAATTTAGCCGCTGGCTCTACACCCTCTATATCAGTTTCTAGGGACAGCACTGATATTCTGGGTCAAAGCCAAGAAGGCCAGCCTTCTCATGCAGATTCTGTTTCTCTGGAAAACCAGGCTGTTCTGCAACCAGTAGCTGTTACCCAAAAGCATGAAGATAACTTCCAATACTCTACACCATGGTTTTCGGTGGTTCCTTCTAATACCCCCATTTTTGCTTCATCTGGCACTGTAGCCCCCCTAAACCCATTAGGCCTTGGTAGAACTCCCCATTTTCCATCACAAACTTCAAATACGGTTCCTACTTTTGGTTCTCAACCTGGATTTCAACCAATTATTCCAAATCAACATGTTTCCGTGCAAGCACCACCACCAAGACAGATTTTACACTATCCACATCTGACTCAAGCGACTCCTTTGGGTCACGTTGGCCCCCCAAGAAATGCTTCTATAATATCTGTACAGAATCTGTCAACTCCAACAAATGCTTCACATTCATTTCCTGTTACTTTAAGCCAATCAACGCCAATAGGACAACTGCAGACATCAGTGTCTTCATTTCCTCTACCCATATCTGGTGTATCACCATTGCCCATAGCTAACCAGCCCATCACCCATCTTGGGGTCCCTTCTGGCCAGAATGAACCCCTTGTCGCTGTTAAAACATCCATTGGTCCCAGCAATATGGGGTCAATGGTTCCACCTGGAAGACCTGCCTCTCTACATCAGCAACCGGAAGTTGCATTTATGCCACCACAGTCAAATATGTCAATGACACCACGATCTGCTTCCTTTCCTCCACATCAAGTAGGAATATCCCCCGGGCCATTATCTTCTTTGAGACCTATGTCTGTACCAATACCTGCACCTAAACATTCATCTGTAAACCATTTAGCAGGACCTGTTTCATTTCCTTCGTCAGGAATATCCCCTTCTTTTCCATTGCCTCAGCAAGCAGGAATACCCAATTCTGCTTCTGGAATTGCTCCTTTCCACACCCATTTAAAACCATCTGTCTTGGTGCCATCAAAATCTGGAAATTTTACTTTTCGATCACATGCCCCCAATGCAGACTACAGTCAAGCAGGTGCTACACAGGAGCCACCTTCTGGTCCACGGCCTCCGCCATTTGGGTTTGGCGTGCCTGATCAGCCTCTTCAAAACTTTCCTAGGACACAATTCACTGCTCAAGTGGATCAAACCATTTCCTTCGGGGGAAGATCAAACTCAATTCCAACCCCAAGACATACTGCGTTTCCATATGGTGGTCAACCTGCACCTAGATCTCCAGTCCCACAAATGGGTATGAATAACTTCATTCCTGCTCCGCAAAGGCCAAACTTGACCGGTGCTGTTGCCCAAAGAGGCATGCCTATCCGACAAAGCTACGCTGTTCAGATGACACGGCCAGATATCCCAATGCCCCTGAATCACAAGTTTGTCAACAATACCCTCATGGCTTCTGGGAAGCTACCATATTCTGCGGACCAAATTTATGACCCCTTTTCACCCACTTCTGCACCTCCACAACAAAAAGGTAATCCTGGACAATGA	2361	0.4468	MSAEIDSTSAPEPHKMSGTSSVTTTSGQKLSIFAAKSGFVIPKNKLSGSLVPIFRGAKKHGVTGAINEESSKQTERKSKWGPDLTQDATVRRGKALALQIRVDQITKQLESEKLEVGDTQNLPLGAENTDKSKSGSQMNIKSEMLELEKREAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGPEGDNQKQLEKETAAKIKIHGTKADTGEKGEIKPGTDIHSSYKEMCVNISADSFEKVDAAMSIIELLITSVTGNLAAGSTPSISVSRDSTDILGQSQEGQPSHADSVSLENQAVLQPVAVTQKHEDNFQYSTPWFSVVPSNTPIFASSGTVAPLNPLGLGRTPHFPSQTSNTVPTFGSQPGFQPIIPNQHVSVQAPPPRQILHYPHLTQATPLGHVGPPRNASIISVQNLSTPTNASHSFPVTLSQSTPIGQLQTSVSSFPLPISGVSPLPIANQPITHLGVPSGQNEPLVAVKTSIGPSNMGSMVPPGRPASLHQQPEVAFMPPQSNMSMTPRSASFPPHQVGISPGPLSSLRPMSVPIPAPKHSSVNHLAGPVSFPSSGISPSFPLPQQAGIPNSASGIAPFHTHLKPSVLVPSKSGNFTFRSHAPNADYSQAGATQEPPSGPRPPPFGFGVPDQPLQNFPRTQFTAQVDQTISFGGRSNSIPTPRHTAFPYGGQPAPRSPVPQMGMNNFIPAPQRPNLTGAVAQRGMPIRQSYAVQMTRPDIPMPLNHKFVNNTLMASGKLPYSADQIYDPFSPTSAPPQQKGNPGQ	786

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g03545	786	MobiDBLite	consensus disorder prediction	620	636	-	-
	Viun1g03545	786	MobiDBLite	consensus disorder prediction	768	786	-	-
	Viun1g03545	786	MobiDBLite	consensus disorder prediction	765	786	-	-
	Viun1g03545	786	MobiDBLite	consensus disorder prediction	1	27	-	-
	Viun1g03545	786	FunFam	Splicing factor-like protein 1 isoform A	174	277	-	-
	Viun1g03545	786	MobiDBLite	consensus disorder prediction	525	554	-	-
	Viun1g03545	786	MobiDBLite	consensus disorder prediction	620	657	-	-
	Viun1g03545	786	ProSiteProfiles	Type-1 KH domain profile.	189	260	-	-
	Viun1g03545	786	PANTHER	RNA-BINDING PROTEIN RELATED	29	639	IPR045071	-
	Viun1g03545	786	Pfam	KH domain	189	261	IPR004088	GO:0003723
	Viun1g03545	786	Gene3D	K Homology domain, type 1	169	293	IPR036612	GO:0003723
	Viun1g03545	786	SMART	kh_6	172	265	IPR004087	GO:0003676
	Viun1g03545	786	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	177	268	IPR036612	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g03545	Viun-Chr1	41946953	41953635	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g03545	K13095		-	gmx:100777227	1187.17