LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g03539	ATGATGAAGAAGAAGAAACAGGTACCGGAGTGGATGAACAGTTCTCTGTGGTCCTCCCCCTCTGACCACCACCGCTTTAGTCCGCCCTCTCCTCCTCCTCCGCCTCCCCCCGTCTCTGTCAGAGAAGATCCTCCAACTAATCACAATGCCTCTCCTTCTTCTTCGTCCGTCGACTCTTCCGCTTCTGCATCCTCTGCCGCCGATGACATCTCCTCTCAGACTCAGCTGTTGACCGAGTTATCTAGGAAGATGATAGACATGCGCGAGTTGAGGAGAGTCGCTTCTCAAGGTATTCCTCGTGCTGCCGCCCCTGCTTTACGCCCTACGCTCTGGAAGCTTTTGCTTGGATATCTTCCGTCCGATCGTGCCCTTTGGTCCTCTGAATTAACCAAGAAGAGGTCCCAGTACAGACATTTCAAAGACGACCTCCTCATGAATCCTTCAGAAATCACGAGGAGGATCTACAACTCTGCTGCTCATGACATCGATGATGCAAAATCTGAGACTCGTATCTTGCTTTCTAGATCACAAATCACTCATGAGGATCACCCTTTGAGTCTAGGCAAGACCAGCATATGGAATCAATTCTTCCAGGACACAGAGCTCATAGAGCAGATTGATCGTGATGTAAAACGTACTCATCCGGATATACACTTCTTCTCCGGTGATTCTCAATTGGCAAAATCTAATCAGGATGCTTTAAAGAGCATATTAATTATTTTTGCAAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAAGTATTGGCCCCTCTCTTCTATGTGTTCAAAAATGACCCCGATGAGGAAAATGCTGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTCAACAACTTGATAATAGTATTGTTGGAATCCGTTCCACTATTACAAGATTGTCCCAGCTTTTAAAAGAACACGATGAAGAACTGTGGCGTCATCTTGAGGTCACTACTGAGGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAATTTAATTTTTCTGACATCCTCCATATTTGGGACGTCATTTTAAGTGATCCAGAGGGTCCACAGTTTATAGGATCTTTTCTTAAAGGAAAGATGATTAGAACAAGGTCGAAGCTACTTCGTTGTGTTTCGCTTGAGAGAACTAGGGTATGCTACAGCTTACAGGAAACACTTCTTAGAATATGCTGCGCAATGCTAATTCTCGTCCGTAGGCGCCTCCTAGCGGGTGATTTCACTTCTAACCTCAAGTTGCTGCAAAGTTATCCCTCTACAAACATTAGTCATTTGCTCCATGTGGCAAACAAGTTACGTGTACAGTCAGGCTAA	1380	0.4464	MMKKKKQVPEWMNSSLWSSPSDHHRFSPPSPPPPPPPVSVREDPPTNHNASPSSSSVDSSASASSAADDISSQTQLLTELSRKMIDMRELRRVASQGIPRAAAPALRPTLWKLLLGYLPSDRALWSSELTKKRSQYRHFKDDLLMNPSEITRRIYNSAAHDIDDAKSETRILLSRSQITHEDHPLSLGKTSIWNQFFQDTELIEQIDRDVKRTHPDIHFFSGDSQLAKSNQDALKSILIIFAKLNPGIRYVQGMNEVLAPLFYVFKNDPDEENAAFAEADTFFCFVELLSGFQDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTEVNPQFYAFRWITLLLTQEFNFSDILHIWDVILSDPEGPQFIGSFLKGKMIRTRSKLLRCVSLERTRVCYSLQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSG	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g03539	459	ProSiteProfiles	TBC/rab GAP domain profile.	101	369	IPR000195	-
	Viun1g03539	459	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	58	437	-	-
	Viun1g03539	459	SMART	tbc_4	94	394	IPR000195	-
	Viun1g03539	459	MobiDBLite	consensus disorder prediction	44	72	-	-
	Viun1g03539	459	Pfam	Rab-GTPase-TBC domain	105	374	IPR000195	-
	Viun1g03539	459	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	188	297	-	-
	Viun1g03539	459	FunFam	TBC1 domain family member 13	186	297	-	-
	Viun1g03539	459	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	306	456	IPR035969	-
	Viun1g03539	459	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	78	328	IPR035969	-
	Viun1g03539	459	Gene3D	-	305	458	-	-
	Viun1g03539	459	MobiDBLite	consensus disorder prediction	25	42	-	-
	Viun1g03539	459	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g03539	Viun-Chr1	41928378	41934820	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g03539	K24796		-	gmx:100778830	660.218