Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03517 ATGAGAAGAGAGGGCACAGTGTACACTGCACTTTCTTGCTTTGCTGCTTCTTTGTTTCGGACTCTGCCTCTGTGTCTTCAGAAGCATAACCAAATAATGGAAGCTGTGAGCGCGTGGGGTAACACGCCGTTGGCGACCGTGGACCCAGAAATCCACGACCTCATTGAGAAGGAGAAGCGTCGGCAGTGTCGGGGAATCGAGCTCATAGCGTCGGAGAACTTCACTTCCTTCGCGGTCATAGAGGCGCTGGGGAGTGCCCTCACCAACAAGTACTCCGAGGGTATGCCCGGCAACCGCTACTACGGTGGCAACGAGTTCATCGATCAGATTGAGAACCTGTGCCGTTCCCGCGCCCTCGAGGCCTTCCATCTCGATCCCTCCCGATGGGGCGTCAACGTCCAACCCTACTCAGGTTCTCCGGCCAACTTCGCCGCCTACACCGCTGTGCTCCAGCCCCACGACCGCATCATGGGCTTGGATCTCCCCTCCGGTGGCCACCTCACCCACGGCTACTACACCTCCGGTGGGAAGAAGATCTCTGCAACCTCCATTTACTTTGAGAGTTTGCCTTACAAGGTGAGTTCCACCACCGGATTCATCCACTACGACAAGTTGGAGGAGAAAGCATTGGATTTCAGGCCCAAGCTGATCATCTGTGGTGGCAGTGCCTACCCTAGGGACTGGGACTATGCCAGGTTCAGACAGGTAGCCGACAAGTGCGGTGCTCTCTTGCTCTGTGACATGGCTCACATCAGTGGTCTTGTTGCTGCTCAGGAAGCTAACAATCCATTCGAGTACTGTGACATTGTGACCACAACGACCCACAAGAGCTTGAGGGGTCCTAGGGCCGGTATGATCTTCTACCGGAAGGGACCTAAACCGCCGAAGAAAGGGCAGGCTGAGAATGCAGTGTACGATTTTGAAGACAAAATAAACTTTGCAGTGTTCCCTTCCCTCCAGGGGGGTCCTCACAATCACCAGATTGGGGCACTTGCTGTTGCATTGAAACAGGCTATGAGCCCTGGATTCAAGGCATACGCGAAGCAGGTTAAGGCAAATGCAGTTGCACTTGGAAATTACTTGATGAACAAGGGTTACAGTCTTGTCACCGGAGGAACTGAGAACCACCTTGTCTTGTGGGATCTCCGCCCCCTTGGCCTAACTGGCAACAAGGTAGAGAAACTCTGTGACCTCTGCAACATTACTGTCAACAAAAATGCTGTCTTTGGTGATAGCAGTGCACTGGCACCTGGAGGAGTGCGAATTGGTGCACCAGCCATGACTTCTAGGGGGTTGGTGGAGAAGGACTTCGAACAGATCGGAGAGTTCCTTCACCGTGCAGTGACTCTGACGCTGGAGATCCAGAAGGAGTATGGGAAACTTTTGAAGGATTTCAACAAGGGCCTGGTGAACAATAAGGCTATTGAAGATCTCAAAGTTGATGTTGAGAAATTTTCAGCCTCCTTCGATATGCCCGGTTTCCTAGTGTCTGAGTTGAAGTACAAGGACTAG 1512 0.5271 MRREGTVYTALSCFAASLFRTLPLCLQKHNQIMEAVSAWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALEAFHLDPSRWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSSTTGFIHYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQAENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKAYAKQVKANAVALGNYLMNKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKAIEDLKVDVEKFSASFDMPGFLVSELKYKD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03517 503 Hamap Serine hydroxymethyltransferase [glyA]. 43 493 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun1g03517 503 Pfam Serine hydroxymethyltransferase 45 443 IPR039429 -
Viun1g03517 503 Gene3D - 73 348 IPR015421 GO:0003824
Viun1g03517 503 Gene3D Aspartate Aminotransferase, domain 1 48 492 IPR015422 GO:0003824
Viun1g03517 503 FunFam Serine hydroxymethyltransferase 337 492 - -
Viun1g03517 503 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 34 495 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun1g03517 503 SUPERFAMILY PLP-dependent transferases 33 495 IPR015424 -
Viun1g03517 503 CDD SHMT 45 456 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun1g03517 503 PIRSF SHMT 25 498 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun1g03517 503 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 268 284 IPR019798 GO:0030170
Viun1g03517 503 FunFam Serine hydroxymethyltransferase 73 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03517 Viun-Chr1 41830190 41832277 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03517 K00600 - gmx:100815417 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03517 1 41830190 41832277 Viun1g03517 1 41830190 41832277 ECH