Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03499 ATGGTGAATGCCGTAACTCACAGTCAGAATCAGTGTGTGTTGTTGTTGAAGTTGAATTCCAATTGCAGAGGGAGCAAGAAATGTAGCAGCAGCAGCAGCGTCTTCCCAAAACCCTTTGCCACATTCCCATCCCTCACCACTCAAATTTGCCACGCCTCTTTCCACGGATTACCTTTCGCTGACACAGTTTCAGACACAAAGCACAGAACGCTTCTGGTTGAGACTTACCATCACCATGACAGCCTCAGAGCCCTACTTGTAAAGCTTGAGAGGGAGGATTCCAACCCAATCCACATACTCGCCCAAGACGGAGATTGGTCCAAAGACCATTTTTGGGCTGCTGTCAGGTTCCTTAAACATGCCTCAAGGTTCGCCGAAATCCTTCAGGTGTTTGATATGTGGAAGAACATTGAGAAATCGCGGATTAGTGAGTTCAACTACAACAAGATAATAGGCTTGTTATGCGAAGATGAAATGATGGAAGAGGCGTTATCTGTATTGCAAGAGATGAAGGTTCAAGGTATGAAGCCTTGTTTGGACACTTACAATCCAATAATTCATGGATTATCCAGAGCTGGTAAGTTCAGTGATGCTTTACGGTTTTTTGATGAGATGAAAGAATATGGCTTAGAGCCAGATTCTGAAACCTATGATGGTTTGATTGGAGGGTATGGGAAATTTCAAATGTATGATGAGATGGGTGAGTGTGTGAAAAAAATGGAGTTGAATGGATGTTCTCCTGATCATATCACTTATAATATACTTATCCAGGAGTATGCTCGAGGTGGGCTACTCCAGAGAATGGAAAAGCTATACCAGAGAATGCTTTCAAAGAGAATGATATTGCAATCTTCTACCTTTGTTGCAATGCTAAAGGCTTACACCACATTTGGGATTGTTGAAAAGATGGAAAAAGTTTACAGGAAAGTCTTGAATTCAAAAACATGTGTAGAGGATGATGTGATTAGAAAAATGGCTGAAGTTTATATCAAGAACTACATGTTTTCTCGACTAGAAGACCTGGGACTAGATTTATGTTCAGCATTTGGTGAGAGTGATCTTGTCTGGTGTCTCCGACTCCTTTCTTATGCATGTCTTTTGAGTAAAAAGGGAATGGATATAGCAGTTAAAGAAATGCTAGATTCCAAGATGAATTGGAGTGTTGGTGTTGCAAATATTATCATGCTGGCTTATGTGAAGATGAAAGATTTCAGGCATTTGAGAATTTTACTGTCTCAACTGCCAATCTACCGGGTGCGGCCTGATATTGTCACTGTTGGAATTGTAATGGATGCCAGTAGAATTGGTTTTGATGGCAGAGGAGCTTTAGAATCATGGAGAAGAATGGGCCTTTTGGACAGAGTAGTTGAATTGAAAACAGATTCTCTGGTCATTACTGCATTTGGGAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCTTCTCTTCACCCTGAGGACAAAGAAAGGAAAAAATGGACTTACAATGATCTCATTGCTTTATTGCCAAGAAGCAAACATACTGGTAGCATGACTGTATGA 1545 0.4078 MVNAVTHSQNQCVLLLKLNSNCRGSKKCSSSSSVFPKPFATFPSLTTQICHASFHGLPFADTVSDTKHRTLLVETYHHHDSLRALLVKLEREDSNPIHILAQDGDWSKDHFWAAVRFLKHASRFAEILQVFDMWKNIEKSRISEFNYNKIIGLLCEDEMMEEALSVLQEMKVQGMKPCLDTYNPIIHGLSRAGKFSDALRFFDEMKEYGLEPDSETYDGLIGGYGKFQMYDEMGECVKKMELNGCSPDHITYNILIQEYARGGLLQRMEKLYQRMLSKRMILQSSTFVAMLKAYTTFGIVEKMEKVYRKVLNSKTCVEDDVIRKMAEVYIKNYMFSRLEDLGLDLCSAFGESDLVWCLRLLSYACLLSKKGMDIAVKEMLDSKMNWSVGVANIIMLAYVKMKDFRHLRILLSQLPIYRVRPDIVTVGIVMDASRIGFDGRGALESWRRMGLLDRVVELKTDSLVITAFGKGHFLKSCEEVYSSLHPEDKERKKWTYNDLIALLPRSKHTGSMTV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03499 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Viun1g03499 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Viun1g03499 514 Gene3D Tetratricopeptide repeat domain 99 223 IPR011990 GO:0005515
Viun1g03499 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Viun1g03499 514 PANTHER OS08G0520200 PROTEIN 39 510 - -
Viun1g03499 514 Gene3D Tetratricopeptide repeat domain 224 342 IPR011990 GO:0005515
Viun1g03499 514 NCBIfam pentatricopeptide repeat 250 279 IPR002885 -
Viun1g03499 514 NCBIfam pentatricopeptide repeat 147 177 IPR002885 -
Viun1g03499 514 NCBIfam pentatricopeptide repeat 216 248 IPR002885 -
Viun1g03499 514 NCBIfam pentatricopeptide repeat 181 214 IPR002885 -
Viun1g03499 514 Gene3D Tetratricopeptide repeat domain 343 512 IPR011990 GO:0005515
Viun1g03499 514 Pfam PPR repeat 147 174 IPR002885 -
Viun1g03499 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Viun1g03499 514 Pfam PPR repeat 243 275 IPR002885 -
Viun1g03499 514 Pfam PPR repeat family 178 224 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03499 123 322 Miscellaneous Gene Families AT4G11690 29.000 4.39e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03499 - - gmx:100808924 804.283