Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03492 ATGGCTGTAGATGCTAGGCAAGAGATAGATCTGAAAGTTGGAGTTGCGTTCACTCGATTTCAAACGGGTTATTTCCAGGGAAAATATGGGAACCTGGATTCCAGGGTTATCTCCTATGGACCCTGTCAGACTCCAACCTTAGGATTTTGTGTGCAGCGATATTTACAAATAAACACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAATGGCTATGAAATTCAGCTAGAATGGCATCGTGGCAGATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTTGTTTCTGAAGATGGACTTTTGGAAGTTACTGAAATATCAGAAAAACAGGAAACCAAAAGTCGTCCTGTTGGTCTAAACACAGTGAACCTTCTAAAGGTTGCTTCAAGTGCTCTAGGATTTGGACCTCAGATGGCTATGCAAATAGCTGAACGGTTGTATACTCAAGGTTTCATCAGCTATCCACGCACAGAAAGCACAGCATACCCTCCTTCGTTTGACTTTCGTGGTGTCCTCTCCGCACAAACAAATAATCCAACATGGGGTAATTATGTACACGGGCTACTTACCACTGGTTATCAAAAACCTCGTCTGGGAACAGATGTAGGTGACCATCCTCCCATTACCCCAATGAGATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAGCACTTTATAGGTACAGTTTCTCCGGACTGCAAGTATATAAGGAAAAAGGTTGAGTTTTCCATTGGCGGAGAGGCCTTTCATTGTACAGGGCAGCATGTTGTCACCAAAGGATTTACTTCTATAATGCCTTGGTTGGCGTTAAATGATAAAAATATTCCATCATTTGTAAAAGGCCAGAAAATAGAAGTATCAAAGTTGGAGCTCTATGAGGGGAGTACCAGTGCTCCAGATTACCTAACTGAAAGTGAGCTGATATCCCTGATGGAGAAGAATGGAATAGGAACAGATGCTTCAATTCCCGTACATATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCCCATTAGGCATTACATTAGTAAGAGGTTATCAAACTATAGATCCAGATCTCTGCCTGCCCGATATTCGTAGCTTCATTGAGCAGCAAATTACTCTTATTGCCAAGGGTCAGGTAGATCATCGACATGTGGTACAGCATGTAATTCAACAGTTCACGCAGAAGTTTAGTTACTTTGTCAAAAAGATTGAAGATATGGATGCATTATTTGAAGCACAGTTTTCTACGCTTACTGATTCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGAGATATATGAAGTACATTTCTACTCAGCCTTCACGATTGTATTGTGGTACATGTGAGGAGGTTTATTATCTCCCACAGAAGGGAACCATCAAGCTGTACAAAGAATTGTCTTGTCCTTTAGACAATTTTGAACTTTTAATTTGCTCCACGCCTGGCCCAGATGTTAAATCATTCCCACTATGTCCATACTGCTACAGTAATCCCCCATTCGAAGGCATTGAAGCACTCATCAATACCGCTAAAACTGGTAATGCTGGCAAGATTGGCAAGGGATCTGGCATGCCCTGCAGCCTATGCCCTCATCCCACTTGCCCAAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGCCCAGAGTGCAGTGGAACACTTGTCTTAGACCCAATAAGTGCTCCCAGATGGAAACTTTGTTGTAATATGTGTAATTGCCTAGTTTTTCTTGCACAAGGCGCACACAGAATCTCCACAACTAAAGAGAGGTGCGGTGAATGTGACTCTTCAATCATAGAAGTAGACTTCAACAAGAAAACAACTCCTCTGGAAGACGGAGCAACCTTACACCGAGGCTGCATTCTATGCGATGAGTTGCTTCATTCCCTCGTGGAAATGAAACATGGTAGAAGTTTCAAGCACATGAGCTCAAGAGGAAGAGGTAGAGGAGCAAGAAAAGGTGGAAGGGGCCGAGGACGCGGGGGTGGAAAAGTGATGGATCCAAAAATGAGCTTCCGAGATTTTTAA 2088 0.4258 MAVDARQEIDLKVGVAFTRFQTGYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWHRGRLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQIAERLYTQGFISYPRTESTAYPPSFDFRGVLSAQTNNPTWGNYVHGLLTTGYQKPRLGTDVGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRKKVEFSIGGEAFHCTGQHVVTKGFTSIMPWLALNDKNIPSFVKGQKIEVSKLELYEGSTSAPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHRHVVQHVIQQFTQKFSYFVKKIEDMDALFEAQFSTLTDSGRILSKCGKCLRYMKYISTQPSRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSTPGPDVKSFPLCPYCYSNPPFEGIEALINTAKTGNAGKIGKGSGMPCSLCPHPTCPNSLVSQGVCACPECSGTLVLDPISAPRWKLCCNMCNCLVFLAQGAHRISTTKERCGECDSSIIEVDFNKKTTPLEDGATLHRGCILCDELLHSLVEMKHGRSFKHMSSRGRGRGARKGGRGRGRGGGKVMDPKMSFRDF 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03492 695 Gene3D Topoisomerase I, domain 2 2 416 IPR013824 -
Viun1g03492 695 PRINTS Prokaryotic DNA topoisomerase I signature 37 55 IPR013497 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 PRINTS Prokaryotic DNA topoisomerase I signature 155 164 IPR013497 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 PRINTS Prokaryotic DNA topoisomerase I signature 232 248 IPR013497 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 PRINTS Prokaryotic DNA topoisomerase I signature 330 344 IPR013497 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 MobiDBLite consensus disorder prediction 658 695 - -
Viun1g03492 695 CDD TOP1Ac 1 416 IPR013497 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 MobiDBLite consensus disorder prediction 660 679 - -
Viun1g03492 695 SMART topIban2 1 67 IPR003601 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 Gene3D Topoisomerase I, domain 4 121 246 IPR013826 -
Viun1g03492 695 MobiDBLite consensus disorder prediction 680 695 - -
Viun1g03492 695 FunFam DNA topoisomerase 121 246 - -
Viun1g03492 695 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 150 164 IPR023406 GO:0003917
Viun1g03492 695 PANTHER PROKARYOTIC DNA TOPOISOMERASE 2 654 IPR000380 GO:0003677|GO:0003917|GO:0006265
Viun1g03492 695 SMART topIaneu2 113 368 IPR003602 GO:0003677|GO:0003916|GO:0006265
Viun1g03492 695 SUPERFAMILY Prokaryotic type I DNA topoisomerase 2 456 IPR023405 -
Viun1g03492 695 Gene3D Topoisomerase I, domain 3 61 314 IPR013825 -
Viun1g03492 695 Pfam DNA topoisomerase 2 406 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03492 Viun-Chr1 41653880 41663673 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03492 K03165 - gmx:100791807 1363.98