Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03488 ATGCCCATTTTCTCTGCAACTGCAACGTTCGCTTCCTACACTTCCATCTCCTTCCTCTCAGCTTCACAATCTCAATCACACCTTTCTCCTTTCCTCAATTTCCCTCACAAGTTTACTGTGAAGACACCGTGGCAATGGCAGCACCATCACTACCACACTCATAAACTCTTAATCTCTTCTTCTGGCAATACCCAAATTGACCAAAATCTTGAAAGTGGACTACTTCAACGCCCTACTCCTCCAGACCCACAGGATGACGCTCGTCTTGCTCGGAGATCATCAGATTGGAAGGCTGCAAAGGCATATAAAGATAGTGGACTCATTTATAACGGTAGGATTGAAGGCTATAATTCTGGAGGCCTGCGGGTTCGGTTTTATTCTATTCTGGGATTTCTCCCATTCCCCGAGTTGAGTCCAGTGCATACTTGTAAAGAACCAGAGAAACCTATCCAAGAAATTGCAAGAGGCTTAGTTGGTTCCGTCATATCGGCAAAGGTAATTCTAGCGGATGAGGATAACAAGAGATTGATATTCTCTGAAAAGGAAGGTGCGTGGTCCAAATTTTCAAAACAGATCAATGTAGGGGACATTTTTGAAGGAAAAGTTGGTTATGTTGAGGATTATGGTGCTTTTGTTCATTTGCGGTTCCCTGACGGTCTTTATCACCTTACTGGACTAATACACATCTCAGAGGTGTCATGGGATCTAGTTCAGGATGTCAGAGATATCTTAAAAGTAGGTGACCAAGTGAGGGCCAAGGTTGTCGGTATTGATGGGGTAAAATCAAGGATCACCTTATCAATTAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTCGTCTGATCTTGATTCTCTAAACGGTGGTGAGGATGATAGTATTGAACCTCTTCCAGGGCTTGAAACAATCCTTGAAGAGCTACAACAGGAAGATGGTATATATGATGTGAGAATCAGCCGTCAAGGGTTTGAAAAACGAGTGGTCTCGCAAGACTTGCAACTGTGGCTTTCTAATGCACCTCCCACGAACCAAAGGTTTACTCTACTTGCTCGTGCTGGAAGACAGGTGCAGGAGATACACTTGACTACATCTCTCGATCAGGAAGGTATCAAGAAGGCATTACAACGAGTGTTGGAGCGTGTCCCCTGA 1176 0.4396 MPIFSATATFASYTSISFLSASQSQSHLSPFLNFPHKFTVKTPWQWQHHHYHTHKLLISSSGNTQIDQNLESGLLQRPTPPDPQDDARLARRSSDWKAAKAYKDSGLIYNGRIEGYNSGGLRVRFYSILGFLPFPELSPVHTCKEPEKPIQEIARGLVGSVISAKVILADEDNKRLIFSEKEGAWSKFSKQINVGDIFEGKVGYVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDILKVGDQVRAKVVGIDGVKSRITLSIKQLEEDPLLETLDKVIPQDGSSDLDSLNGGEDDSIEPLPGLETILEELQQEDGIYDVRISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLERVP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03488 391 SMART S1_6 104 181 IPR022967 -
Viun1g03488 391 SMART S1_6 193 269 IPR022967 -
Viun1g03488 391 Pfam S1 RNA binding domain 193 269 IPR003029 GO:0003676
Viun1g03488 391 Gene3D - 96 184 IPR012340 -
Viun1g03488 391 Gene3D - 185 281 IPR012340 -
Viun1g03488 391 ProSiteProfiles S1 domain profile. 106 181 IPR003029 GO:0003676
Viun1g03488 391 ProSiteProfiles S1 domain profile. 195 269 IPR003029 GO:0003676
Viun1g03488 391 SUPERFAMILY Nucleic acid-binding proteins 182 274 IPR012340 -
Viun1g03488 391 SUPERFAMILY Nucleic acid-binding proteins 106 181 IPR012340 -
Viun1g03488 391 PANTHER OS03G0844900 PROTEIN 14 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03488 Viun-Chr1 41633332 41640984 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03488 - - gmx:100798303 629.402