Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03450 ATGTCGTTGGCATCATCATTCTCGATGCTCCGGCACCGCGCGGTGGCTTCCGCCGCTCCTCTCCTCCTGCGCCGCTTCCGGTCACTCCCAATTGCCGCCCGGCAGCAGCAGAACCCTAACAAGCAAGCCGCTCCGAGCCGCAACCTTCTGAAGGCGAAAAAAACGTTGAAGGAGTTTTCCTCTCTCGCCCCTGTCCTCTCCCTGGAAGACAGTCCTCCGCTCACGGAATCACAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCGAATTTCATGCGCGTCATCGTTCCCGAAAGCGACCAGCCTCCTTCTTCTTCTGGAAGCTTCCGCGGGGTGGAGCTTCTCTGCGTGGTGAGGGCGCTGTTAAAGAAGATTAAGCGCAGGGTCATGGTCGGGGACAAGGTTCTTGTCGGTTCCGTGGATTGGGTGGATCGCAGGGGATGGATTGAGAACGTTTTCCACCGATCTTCTGAGATTCTTGACCCTCCCGTTGCCAACGTCGACCACCTTCTCGTTCTGTTCTCGCTCGAACAACCCAGGCCTGAACCGTTTACCCTCACACGCTTTCTTGTTGAAGCTGAATCCACCGGAATTCCTCTCACGCTGGCACTCAACAAGACCGAGCTTGTGGATAAAGAGATCATTAGTTCGTGGAAGGCCAGGCTGCGCAGCTGGGGGTATGAGCCGGTTTTTTGCAGCGTTGAATCTGGACATGGACTTGATCTTCTTGCATTCAAGCTGAGGGATCAAACGACAGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATAAATGCCCTTAGAAGCAATCCTTCTGATGCTGCGGAAGGGGAAAATTGGTTTGAGCCTATTTCTGGAAGCAAGTGGCTTGAGGATCAACGCGTTGGGGAGGTTTCCACGAGAAGTGGTAGAGGAAAACATACTACTCGCCATGTCTCTTTGCTTCCAATATCTGGAGGGGGGTTTCTGGCTGATACTCCTGGATTTAACCAACCCAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATCAGGAAAATGCTCAGTGCAAAGGAGACTGAGAAATGCTCATTTAAAAATTGCTTGCATCTGGGAGAACCTGGGTGCATTGTGAAGGGAGACTGGGAAAGATATTCATTCTATTTTCAACTTCTGGATGAAATCAGAATCAGGGAAGAGTTCCAACTTAGGACATTTGGAACTAAAAGAGAAGGGGATGTAAGGTTGAAAATGGGAGATATGGGTGTTCAGCAAGCGGAACCACGGTTGGAACCTAAAAAGCACAGGAGACAATCTCGGAAGAGGATTAACCAGTCAATTTTAGACGACTTAGATGATGATGACGACGACGACATTTATGAGGAAAATGATCCCATTTTAAGGGCGCTAAGGGATGAAAACTCTTAG 1425 0.5053 MSLASSFSMLRHRAVASAAPLLLRRFRSLPIAARQQQNPNKQAAPSRNLLKAKKTLKEFSSLAPVLSLEDSPPLTESQAIGVVAASQANFMRVIVPESDQPPSSSGSFRGVELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRGWIENVFHRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKTELVDKEIISSWKARLRSWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPSDAAEGENWFEPISGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPISGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSAKETEKCSFKNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDDLDDDDDDDIYEENDPILRALRDENS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03450 474 Pfam RsgA GTPase 151 335 IPR010914 GO:0003924|GO:0005525
Viun1g03450 474 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 79 398 IPR004881 GO:0003924|GO:0005525
Viun1g03450 474 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 155 333 IPR030378 GO:0005525
Viun1g03450 474 Gene3D - 153 335 IPR027417 -
Viun1g03450 474 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 50 457 IPR004881 GO:0003924|GO:0005525
Viun1g03450 474 Gene3D - 74 152 IPR012340 -
Viun1g03450 474 CDD YjeQ_EngC 164 392 IPR004881 GO:0003924|GO:0005525
Viun1g03450 474 ProSiteProfiles EngC GTPase domain profile. 164 331 IPR010914 GO:0003924|GO:0005525
Viun1g03450 474 NCBIfam ribosome small subunit-dependent GTPase A 128 272 IPR004881 GO:0003924|GO:0005525
Viun1g03450 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 394 IPR027417 -
Viun1g03450 474 SUPERFAMILY Nucleic acid-binding proteins 79 154 IPR012340 -
Viun1g03450 474 Gene3D Probable gtpase engc; domain 3 337 399 - -
Viun1g03450 474 MobiDBLite consensus disorder prediction 418 459 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03450 K06949 - gmx:100796145 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03450 1 41451679 41454645 Viun1g03450 1 41451679 41454645 ECH