Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03420 ATGTTCAATAAGATATTCAGTAAACTCCCTCGGAAGTCATCGAGAGGTCCCGAACACGGTGGAAGTGGAAAAGGCCATCATGGGGTTACCACTTCTTCGAAGAACAGTGATTCTGTTAGTGTTTCCCCAGGTGGTTCCAGACAGGGGAATTCTTCCGTTGCGGGACAGAATCATGGTAACAGAGTTCCATTACCGAAGGTTGTGAATGAGAACAATATTCACAACGCCAATAACGGGAATTTGGGTTCCTATGAGGCATTGCCTGCATTCAGGGATGTTCCCTCTTCTGAGAAGACAACTTTGTTTGTCAAGAAGCTTAGAATGTGTTGTGTGGTGTTTGACTTCACTGACCCCGCCAAACACGTCAAGGAGAAGGAGGTTAAGAGACAGACCTTGGTGGAACTCTTGGATTATGTGACTTCTGCGAATGCTAAGTTCGCGGAGAATGTGATGCAGGAGGTTGTGAAAATGGTGTCTGCAAACATATTCAGGACACTCAGTCCTCAGCCACGCGAGAATAAGATCGTTGATGGTGTTGATGTGGAGGAGGAGGAGCCTTCGATGGATCCTGCTTGGCCTCATTTGCAGATTGTGTATGAGCTTTTTCTGCGGTTTGTGGCCTCACCTGAGCTGGATCCGAAGTTGGCCAAGAGATACATTGACCAGTCCTTCATTTTGAAGCTGCTGGATTTGTTTGACTCCGAGGATCCGAGGGAGCGGGAGTACTTGAAGATGACTCTGCACCGTATCTATGGCAAATTCATGGCGCATCGCCCTTTCATCAGGAAGGCCATCAACAATGTGTTTTTTAATTTTATTTTTGAGACTGAGAAGCATAATGGGATTGCTGAGTTCTTGGAAATTCTTGGGAGCATCATCAATGGTTTTGCATTGCCATTGAAGGAAGAGCATAAACTGTTTCTTGTTCGTATCCTAATTCCTCTGCACAAGCCAAAGTGCTTGGCAATGTATCATCAACAGTTGTCGTATTGCATTACTCAGTTTGTGGAAAAAGACTGCAAACTTGCCGATACAATTATCAGGGGGCTGTTGAAGTACTGGCCCATAACAAATAGTTCTAAGGAAGTTATGTTCCTGGGTGAGTTAGAAGAAGTCTTGGAAGCAACTCAACCCCCAGAATTCCAGCGTTGTATGGTGCCATTGTTTCGTCGGATTGCCCGTTGTTTGAATAGCCCTCATTTTCAGGTGGCAGAAAGAGCTTTGTTCTTGTGGAACAATGATCATATCGTGAACTTAATCAAGCAAAACAGAAAAGTGATACTACCCATCATCTTCCCTGCATTGGAGAGAAATGCTAGAAGTCATTGGAACCAAGCTGTCCATAGTTTGACCTTAAATGTGCGGAAGATTTTTAATGATGTCGACGCTGATTTATCCAAAGAATGTTTACAAAAGTTTGAGGAAGACGAGTCAAAGGTAGATGAAGTCAAAGCAGGGCGTGAAGCCACGTGGAAACGCTTGGAAGAGCTTGCCATGAAGAAAGCTGCAAGTGGGGAAGCCGTGCTTATTGGTAAAGCACCAACTCGCCCCTCTGCAGGTTAG 1563 0.4498 MFNKIFSKLPRKSSRGPEHGGSGKGHHGVTTSSKNSDSVSVSPGGSRQGNSSVAGQNHGNRVPLPKVVNENNIHNANNGNLGSYEALPAFRDVPSSEKTTLFVKKLRMCCVVFDFTDPAKHVKEKEVKRQTLVELLDYVTSANAKFAENVMQEVVKMVSANIFRTLSPQPRENKIVDGVDVEEEEPSMDPAWPHLQIVYELFLRFVASPELDPKLAKRYIDQSFILKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNVFFNFIFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVPLFRRIARCLNSPHFQVAERALFLWNNDHIVNLIKQNRKVILPIIFPALERNARSHWNQAVHSLTLNVRKIFNDVDADLSKECLQKFEEDESKVDEVKAGREATWKRLEELAMKKAASGEAVLIGKAPTRPSAG 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03420 520 Gene3D - 94 497 IPR011989 -
Viun1g03420 520 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 87 498 IPR002554 GO:0000159|GO:0007165|GO:0019888
Viun1g03420 520 MobiDBLite consensus disorder prediction 1 65 - -
Viun1g03420 520 SUPERFAMILY ARM repeat 100 479 IPR016024 -
Viun1g03420 520 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 503 IPR002554 GO:0000159|GO:0007165|GO:0019888
Viun1g03420 520 MobiDBLite consensus disorder prediction 26 58 - -
Viun1g03420 520 PIRSF PP2A_B56 6 516 IPR002554 GO:0000159|GO:0007165|GO:0019888
Viun1g03420 520 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 94 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03420 Viun-Chr1 41279967 41284811 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03420 K11584 - gmx:100811438 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03420 1 41279967 41284811 Viun1g03420 1 41279967 41284811 ECH