Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03338 ATGGGTGCTGCGGGTTCCAAGCTCGAGAAAGCTCTCGGCGACCAATTCCCCGAAGGGGAACGCTACTTTGGCCTCGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTCTGTGTTCCTTTTCGAGAACAATTGCTAGAGTATTATGCAAATAACAAGAGCTTGGCAGATGGTGAGGAAAATCTTTTGACTTGCTTAGCCGACTTATTTTCACAGATAAGTTCTCAGAAGAAGAAAACGGGTGTTATTGCTCCCAAACGATTTGTTCAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCTCACGAATTCTTGAACTTTTTGCTAAATGAACTTGTTGACATTCTGGAGAGAGAGGCCAAGGCTGCAAAAAATGATCAAGAAACATCACCACCTTCTGAAAAGGCTGCAAATGGACCTAATAATGGTCTACCTAATGGCTAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATTCTCACCAACGAAACTAGGTGCCTGCGTTGTGAAACTGTGACAGCTAGGGATGAAATATTTTTTGACTTGAGCCTTGATATTGAACAAAATAGTTCAATTACGAGTTGTTTGAAGAACTTCAGTTCAACGGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACGTCTTGGTCATACACCTTAAGCGTTTTAAATACATTGAACAGCTGGGACGCTACAAGAAGCTGTCTTACAGGGTTGTCTTCCCTCTAGAGCTGAAATTAAGCGATACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTTCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTAAGCCTTGTGAAAAGCCACAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTTTTTGGGTCATCGCAAGAGTATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCCGGTAACAGGAACTAG 1107 0.4146 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSLADGEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEREAKAAKNDQETSPPSEKAANGPNNGLPNGSXKEPLVTWVHKNFQGILTNETRCLRCETVTARDEIFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNRN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03338 369 CDD Peptidase_C19G 24 361 - -
Viun1g03338 369 Gene3D Cysteine proteinases 5 362 - -
Viun1g03338 369 MobiDBLite consensus disorder prediction 138 157 - -
Viun1g03338 369 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 362 - -
Viun1g03338 369 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Viun1g03338 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Viun1g03338 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Viun1g03338 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 363 - -
Viun1g03338 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Viun1g03338 369 MobiDBLite consensus disorder prediction 134 163 - -
Viun1g03338 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03338 Viun-Chr1 40831294 40835893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03338 24 334 Miscellaneous Gene Families AT4G31670 26.332 1.42e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03338 K11842 - gmx:100305765 723.391