Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03303 ATGTACCAGATCTCGATCTCGATGCGGTGGCGGTTGCTGCTATTGTTGTTGTTGGAGCTAACGGCACGCGCAATGCCGCTTCCGATCACGTTTTCCGCGCGCCTCGTTCACCGCTTCGCTGACGAAATCAAACCGGTTCGAATTCCGACCGGCGACTGGCCAGACCGGAAGAGCTTGCGCTACTACCAGATGCTTCTCGCCGACGACATTCTCAGACGCAAGATCAAACTCGGAGGCGCTCGCTACCAGCTTCTGTTTCCTACTCACGGTAGCAAAACATTGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGCAGTGATCTTCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAATATAGTCCGTCTCGATCGTTATCCAGTAAGCATCTGTCTTGCAGTCATCACTTGTGTGATAATGGTTCGAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCAGATAATACATCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCTGGTGGCGGTTTATCAAACTCGTCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTACTTGGATGGGGTTGCCCCCGATGGTCTATTAGGTTTGGGACCTGGGGAGAGTTCTGTTCCAAGTTTTCTTGCCAAGTCAGGATTAATCCACAATTCCTTTTCCTTGTGCTTTGATCAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACCCCGTTCTTGCCTTTGGACGGATTATATTCAACGTACATTGTTGGAGTGGAGTCATCTTGTATTGGGAATACTTGTCTTAAAATGACAAGTTTTAAAGCACAGATTGATAGCGGAACGTCTTTTACGTTTCTTCCCGGCCATGCTTATGGAGTAATAGCCGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGCTATGTACCCAGTTCGCAAGAGTTGCCAAAAGTTCCCAGCTTAACTCTCATGTTCCAGCAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATCCAGCCAACAGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACTGGATACCGTTTGGTATTTGACAGGGAAAACAAGAAGCTAGCGTGGTCACGTTCAAATTGTCAGGATTTGAGTGTAGATAAGAGGACGCCCCTTTCTCCAAATGAGACTTCACCAAACCCATTGCCTTCAGATGAGCAACAAAGGACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAATCTTCAGCAGCTTTATCTCGGATGAATTCAGTGTTCCGGGTATATTGGCAGTGCTCTTTCTTTCTTCTTTTTCAACTCGTGTCTGCCTCTTACTGA 1587 0.4657 MYQISISMRWRLLLLLLLELTARAMPLPITFSARLVHRFADEIKPVRIPTGDWPDRKSLRYYQMLLADDILRRKIKLGGARYQLLFPTHGSKTLSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHHLCDNGSNCKSSQQQCPYMVSYLSDNTSSSGLLVEDILHLQSGGGLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHNSFSLCFDQDDSGRMFFGDQGPTIQQSTPFLPLDGLYSTYIVGVESSCIGNTCLKMTSFKAQIDSGTSFTFLPGHAYGVIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLMFQQNNSFVVYNPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSVDKRTPLSPNETSPNPLPSDEQQRTNGHAVAPAVAGRAPHKSSAALSRMNSVFRVYWQCSFFLLFQLVSASY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03303 528 Gene3D Acid Proteases 91 286 IPR021109 -
Viun1g03303 528 FunFam Aspartyl protease family protein 1 90 286 - -
Viun1g03303 528 FunFam Aspartyl protease family protein 1 289 454 - -
Viun1g03303 528 Gene3D Acid Proteases 287 454 IPR021109 -
Viun1g03303 528 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Viun1g03303 528 PRINTS Pepsin (A1) aspartic protease family signature 110 130 IPR001461 GO:0004190|GO:0006508
Viun1g03303 528 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Viun1g03303 528 ProSiteProfiles Peptidase family A1 domain profile. 104 448 IPR033121 -
Viun1g03303 528 PANTHER ASPARTYL PROTEASES 26 445 IPR001461 GO:0004190|GO:0006508
Viun1g03303 528 Pfam Xylanase inhibitor C-terminal 326 448 IPR032799 -
Viun1g03303 528 SUPERFAMILY Acid proteases 98 453 IPR021109 -
Viun1g03303 528 MobiDBLite consensus disorder prediction 456 482 - -
Viun1g03303 528 Pfam Xylanase inhibitor N-terminal 105 286 IPR032861 -
Viun1g03303 528 MobiDBLite consensus disorder prediction 456 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03303 Viun-Chr1 40631741 40636079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03303 97 455 Miscellaneous Gene Families AT1G44130 28.721 3.34e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03303 - - gmx:100817311 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03303 1 40631741 40636079 Viun1g03303 1 40631741 40636079 ECH