Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03300 ATGTCGCCAAAATATCAGACTCTGGACAATCGTCCAATTAACCAGTGGAAGGTTACGGAGTTGAGAGAGGAGCTGAGGAGGAGGAGGTTAAACACCAAAGGTTTGAAGGATGATTTGGTAAAGCGGTTGGATGAATGCCTTCGTCTTGAAAGGGAGAGTGAGCAGGATTCTGAGGAGGAGGCCAATGGTTTTGATGATGGTCATGTAGACGGGGAAAAAGATTCTGCGGCGGTTACTATGGATGCTAAAGTCGTTGACGCAACTGACAAGGAAAGTACCCAAACATTTGAGACAGCTGAAAAGGGGAAGAGTGATGTAGTTGAACCGATTGAAACAAAAAATGAGGAAAAGTTTCCGGGGGTTGTGGATGAAGACAGCAATAAGAATGACAAGCAGGGTGGTATTGCTGGCCAAGTTGACATTAATAATAGTGTGTCAACCATGGATGAAGAAGTTGAACACGAGGGCTTTCCCTCCGGTGTAGATTCTGGAAATGTGGTAGAGGAGGCCGCTAGTACTCATGCTTCTACTGTAGAGACCACAATTACAGTCACTGAAAGTGTAGTAACAGGAGTGGTAGTCAGTGGTGAGGATACATACTGTGCAGAAAAGAACAATGAGTTTTCTGCAGCAAAGCTAGAGAATGATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGATACAAAGCCCCAACTGGATTCTGAGACAAAGCCCCTGCACGAGGATATTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATGCAATGGATGTTGGAGGGCGGCATGAGAAAAAGACATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGATTTGAATAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAATTTAGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAGAAAGAAAGTGGAGAGTATTGAAGAGCCTATTGTGAAGGAGGAGAGTAGGACTATAGCGGTGGGAGATGGTGTATCTGGAGGAAAAAATGATACCCACCAAGATATTGACATTAGTCCCGTTGCCCCAACTGAGAAACGAAAATTCCATGAACAAATATCGGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATCCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAACCAATTGCTCTGAAACGCAACCTCTCTAGGTCTGATTCCACTGCTACTGATGACACACCTAAAGAGCGCATTGTTCCACCATCACAAAGGTCCCCAACTAATTCCCTCAGGATTGATCGATTCCTCCGTCCATTTACTCTGAAAGCTGTGCAAGAGCTTCTTGGTAAGACTGGGAATGTCAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCATCTGTTGAAGAAGCCATGGAGACACGGAATGCTGTGTATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAACCTCCTGTACAGGCTGCCCCCATCAGCACTGCTCCAGTAGTTCCGCCTGTGGTCCCCACATCACAGCCAGAGCCTTCCCCTCGACTGCACAGGGAGCAGCATTCAGTTCCAACTATGCTCCCACCTCCACCACCATTGTCAAAAAACCCACCAGTTGCAAGAGATCGGCTTCCATCACCACCACCTCTTCCTGAGAAAGTCGACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCATATCAACTCCTCGGATCTACTACTTGCCTTTATCCGAAGAGCAAGTTACTGCAAAACTTGCTGCACAGGGTAAAAGCGTGAGGCAGTAG 2133 0.4459 MSPKYQTLDNRPINQWKVTELREELRRRRLNTKGLKDDLVKRLDECLRLERESEQDSEEEANGFDDGHVDGEKDSAAVTMDAKVVDATDKESTQTFETAEKGKSDVVEPIETKNEEKFPGVVDEDSNKNDKQGGIAGQVDINNSVSTMDEEVEHEGFPSGVDSGNVVEEAASTHASTVETTITVTESVVTGVVVSGEDTYCAEKNNEFSAAKLENDEESKAQLDGEDTKPQLDSETKPLHEDIVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHAMDVGGRHEKKTSVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELRKKVESIEEPIVKEESRTIAVGDGVSGGKNDTHQDIDISPVAPTEKRKFHEQISVGNNEPAKRQRRWNTETVKGPDPQSTTPRPATTPRDEPIALKRNLSRSDSTATDDTPKERIVPPSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAMETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPVQAAPISTAPVVPPVVPTSQPEPSPRLHREQHSVPTMLPPPPPLSKNPPVARDRLPSPPPLPEKVDPPIVTLDDLFRKTISTPRIYYLPLSEEQVTAKLAAQGKSVRQ 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03300 710 MobiDBLite consensus disorder prediction 337 357 - -
Viun1g03300 710 SUPERFAMILY SAP domain 13 50 IPR036361 -
Viun1g03300 710 MobiDBLite consensus disorder prediction 50 141 - -
Viun1g03300 710 Pfam RNSP1-SAP18 binding (RSB) motif 666 707 IPR032552 -
Viun1g03300 710 MobiDBLite consensus disorder prediction 359 385 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 610 670 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 62 130 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 248 281 - -
Viun1g03300 710 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Viun1g03300 710 MobiDBLite consensus disorder prediction 463 478 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 208 281 - -
Viun1g03300 710 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 709 - -
Viun1g03300 710 SMART sap_9 13 47 IPR003034 -
Viun1g03300 710 MobiDBLite consensus disorder prediction 486 502 - -
Viun1g03300 710 SUPERFAMILY RNA-binding domain, RBD 510 597 IPR035979 GO:0003676
Viun1g03300 710 MobiDBLite consensus disorder prediction 322 336 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 404 515 - -
Viun1g03300 710 Pfam SAP domain 13 44 IPR003034 -
Viun1g03300 710 MobiDBLite consensus disorder prediction 299 385 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 637 668 - -
Viun1g03300 710 MobiDBLite consensus disorder prediction 209 244 - -
Viun1g03300 710 Gene3D SAP domain 13 62 IPR036361 -
Viun1g03300 710 CDD RRM_ACINU 516 596 IPR034257 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03300 K12875 - gmx:100786288 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03300 1 40609068 40612929 Viun1g03300 1 40609068 40612929 ECH