Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03299 ATGGAAGATGAGCATAATCCAAAACCCGTAGTTATCATCACAGGATGTTCCACGGGAGGAATAGGTCACGCGCTTGCGTGCGCGTTCGCGGAGAAGAAGTGCAGGGTGGTGGCGACGAGTAGGTCGCGGTCGAGCATGGCGGAGCTGGAACACGACCACCGATTTTTGTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGCGCAGAGTGGTTGACGCTGTTGTCGAGACGTACGGTCGCATCGACGTGCTCGTTAACAACGCTGGTATTCAGTGCGTGGGCCCACTCGCCGAGGTTCCTCTCTCTTCCATTCAAAACACTTTCGACACCAATGTATTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTTCCTCATATGGCAACTAGGAAAAAGGGGAAGATTGTGAATATTGGTAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTACACAGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATTCATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTCTCCCCGGAGCTATCAAATCAAATATTGGAGATTCTGCCATAGCCAGCTACAACCGCATGCCTGAATGGAAATTGTTCAAGCCTTTTGAAGCAGCAATACGAGACAGAGCTTACTTTTCTCAGAAGACGAAATCAACCCCAACAGATGAGTTTGCTAAAAACACTGTAGCTGCTATTCTTAAGGAGAAACCTCCGGCATGGTTTACCTATGGACATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGGGATTTTATTCTGAAGAAAGCAATGAAATGCTGA 840 0.4702 MEDEHNPKPVVIITGCSTGGIGHALACAFAEKKCRVVATSRSRSSMAELEHDHRFLLEELDVQSDESVRRVVDAVVETYGRIDVLVNNAGIQCVGPLAEVPLSSIQNTFDTNVFGSLRMVQAVVPHMATRKKGKIVNIGSVAALASGPWSGTYTASKAALHALTDSLRLELGHFGIDVVNVLPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKTKSTPTDEFAKNTVAAILKEKPPAWFTYGHYSTVMAIMYHLPISVRDFILKKAMKC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03299 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 IPR002347 -
Viun1g03299 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Viun1g03299 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 IPR002347 -
Viun1g03299 279 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 7 259 - -
Viun1g03299 279 Gene3D - 9 269 - -
Viun1g03299 279 Pfam short chain dehydrogenase 10 193 IPR002347 -
Viun1g03299 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 263 IPR036291 -
Viun1g03299 279 PRINTS Glucose/ribitol dehydrogenase family signature 11 28 IPR002347 -
Viun1g03299 279 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Viun1g03299 279 PRINTS Glucose/ribitol dehydrogenase family signature 127 143 IPR002347 -
Viun1g03299 279 PRINTS Glucose/ribitol dehydrogenase family signature 174 191 IPR002347 -
Viun1g03299 279 PRINTS Glucose/ribitol dehydrogenase family signature 153 172 IPR002347 -
Viun1g03299 279 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 179 - -
Viun1g03299 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 140 168 IPR020904 GO:0016491
Viun1g03299 279 CDD 17beta-HSD-like_SDR_c 10 255 - -
Viun1g03299 279 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 7 278 - -
Viun1g03299 279 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03299 Viun-Chr1 40604793 40606647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03299 12 183 Lipid Metabolism Gene Families AT1G67730 31.551 1.23e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03299 - - gmx:100789660 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03299 1 40604793 40606647 Viun1g03299 1 40604793 40606647 ECH