Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03279 ATGATACCCGTTGATAACGGGATTCTGAATCCCAAAGATGAAATTGAGGAATGTAGTGGCAGTAAAGTGAAGGACTGTGTTTCTATAGATATTTCAACAACTCAAGAAACATTTCTGAGCAGTGAAGATTCCCAGAGAAAGCTTCAAGGCACTTTAAGTTCTTCTGTTCCTAAAAGGACAAATTTTCTTAAATTTGGTTCGGCATCTGCCAAATTCAAGAGGCTTGCTATTGAGAGAGACAAGATTTCACTATCTGTGCCTTCTCCTCGTTCAAAGGGCCTAAGAGCACGTTTCAGAGGAATGCTTGCTCTGAAACTTGATGGGGGTTCGGTGAAGAAGATGTGCGTGGAGTGGATTAGAAGTCCAGTGAACATGGCCCTTTTTGTGTGGATCACATGTGTTGCTATTTCTGGTGCAATTCTGTTCCTGGTCATGACAGGCATGTTGAATCGTGTGCTTCCGAGGAAGTCTCAGAGAAATGCATGGTTTGAAATAAATAACCAAATACTCAATGCATTGTTTACACTCATGTGCTTGTATCAACACCCTAAGAGGTTCTACCACCTTATTCTTCTGATCAGATGGAGACCAAATGACATCTCTAGACTTAGATATTTTTACTGCAAGAATGGTACTTACAAGCCCCACGAGTGGACACATATGATGGTAGTGGTTATTCTCCTTCATGTTAATTGTTTTGCTCAATATGCACTTTGTGGTCTAAACTTGGGGTATGAAAGGTCTGAGAGACCCGCCATTGGAGTTGGAATATGTATCTCTTTTGCAATTGCTGCTCCTGCAGTTGCTGGTTTGTACACCATTCTTAGTCCACTCGGGAAGGACTATGACAGTGACACGGATGAAGAAGTACAGGTTCAAATTAGTGGCTCTCAGAGGCAACAGCATCTGAGAGAGAAACCATGTGAGAAGAAATATTCATTTGCATGCAAAGATCAACAAAGGGTTGTTGAAAATAGACCAGAGTGGAGTGGAGGAATACTTGACATATGGAACGATATTTCCTTAGCATATCTCTCACTTTTCTGCACCTTTTGTGTCTTTGGGTGGAATATGGAGAGACATGGCTTTGGAAACATGTATGTCCATATTGCCACTTTTATGCTATTTTGCATGGCACCTTTCTGGATTTTCATTTTGGCTTCTGTTAACATAGATGATGACAGTGTTAGGCAGGGTCTGGGAGGTGTTGGAATCGTTCTTTGTTTTCTTGGTTTACTATATGGTGGATTTTGGAGGATCCAAATGAGAAAGAGGTTCAACTTACCTGCCTATGACTTCTGTTTTGGCAAACCTTCGGCTTCTGATTGCACACTTTGGCTATGCTGTTCTTGGTGCTCTCTTGCTCAAGAAGCAAGAACAGGAAATAACTACGATCTTGTAATCGACAAGTCCTATGGTAAACAAAATGATGAAACTTGCAACGAACCTTCGATCTCAGCTTTGGCTAGGGAAGATGTAGTATCAACCAAATCTGGCACAAGTTCTGTGGGTGGCAACTCTTCACCTTGTATGATGAAAACCAATGTCTTAAATTAG 1557 0.413 MIPVDNGILNPKDEIEECSGSKVKDCVSIDISTTQETFLSSEDSQRKLQGTLSSSVPKRTNFLKFGSASAKFKRLAIERDKISLSVPSPRSKGLRARFRGMLALKLDGGSVKKMCVEWIRSPVNMALFVWITCVAISGAILFLVMTGMLNRVLPRKSQRNAWFEINNQILNALFTLMCLYQHPKRFYHLILLIRWRPNDISRLRYFYCKNGTYKPHEWTHMMVVVILLHVNCFAQYALCGLNLGYERSERPAIGVGICISFAIAAPAVAGLYTILSPLGKDYDSDTDEEVQVQISGSQRQQHLREKPCEKKYSFACKDQQRVVENRPEWSGGILDIWNDISLAYLSLFCTFCVFGWNMERHGFGNMYVHIATFMLFCMAPFWIFILASVNIDDDSVRQGLGGVGIVLCFLGLLYGGFWRIQMRKRFNLPAYDFCFGKPSASDCTLWLCCSWCSLAQEARTGNNYDLVIDKSYGKQNDETCNEPSISALAREDVVSTKSGTSSVGGNSSPCMMKTNVLN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03279 518 NCBIfam uncharacterized Cys-rich domain 328 460 IPR006461 -
Viun1g03279 518 PANTHER PLAC8 FAMILY PROTEIN-RELATED 14 498 - -
Viun1g03279 518 Pfam PLAC8 family 329 459 IPR006461 -
Viun1g03279 518 Pfam Protein of unknown function (DUF2985) 117 195 IPR021369 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03279 Viun-Chr1 40442215 40444774 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03279 - - gmx:100811964 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03279 1 40442215 40444774 Viun8g02403 8 33825361 33828356 ECH
Viun1g03279 1 40442215 40444774 Viun1g03279 1 40442215 40444774 ECH
Viun1g03279 1 40442215 40444774 Viun8g02403 8 33825361 33828356 PCT