Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03267 ATGACCATTCTCGACAACCACTACTCCTCCATCTTCTTAGCCACCATTTTCCTTCTCTTAACTTCAGCATTGTCTGCAGCAAATGCAAAAATTCACGCGCATGAGTTTGTTGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACACACAATGCCATCACCGTGAACGGCCAATTCCCCGGCCCAACGTTGGAAATCAACAACGGAGACACTTTGGTCGTGAAAGTCACAAACAAAGCTCGTTACAATGTGACCATTCATTGGCACGGTGTTAGGCAGATGAGAACAGGATGGGCAGATGGACCAGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACCTACCGTTTTACCGTACAGGGACAAGAAGGAACACTTTGGTGGCATGCTCATAGCTCCTGGCTTAGAGCCACCGTTTATGGTGCTTTAATCATTCGTCCCAGGGAAGGACAGCTCTACCCTTTCCCCAAGCCAAACCACGACACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATTGATGTGGTGAGACAGGCCACACGAACTGGAGGAGCTCCTAATGTCTCTGATGCATACACCATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCAACCAAAGATACTACCACTGTTCCGATTCATGCTGGAGAAACAAACCTTCTACGTGTCATCAATGCTGCACTCAATCAACCTCTCTTCTTTACCGTCGCAAACCACAAACTTACGGTCGTTGGCGCCGACGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGTTGGGACCCGGCCAAACCACTGATGTCCTCATTACCGCCGACCAACCACCATCTCGCTACTACATGGCGGCGCGTGCATACCAATCTGCTCAAAACGCTGCGTTTGACAACACCACCACCACCGCAATATTGGAATACAAATCACCTCACCATGGTAACCATGCTCAGCATCATCGTTCTAAAGGTGTGAAGAGCAAAACGAGACCTATAATGCCTCCACTCCCTGCTTACAACGACACAAACACCGTCACTGCTTTCAGCAGAAGCTTCAGAAGCCCCAGAAGAGTTGAGGTCCCCACTGAAATCGATCAAAGCCTTTTCTTCACCGTGGGCTTAGGACTCAACAAGTGCCCTAAAAACTTCAAACCAAATAGGTGTCAGGGACCCAATGGGACGAGGTTCACTGCGAGCATGAACAACGTTTCTTTCGTGCTACCCAACAACGTTTCCATCTTGCAGGCTCAGTACCTCGGAATCCCGGGAGTGTTCACGACCGATTTTCCGGGGAAGCCGCCGGTGAAGTTCGATTACACCGGCAACGTGAGCCGTTCATTGTGGCAACCTATTCCCGGGACTAAGGCTCACAAGTTGAAGTTTGGGTCGAGGGTTGAGATTGTGTTGCAGGATACTAGCATTGTTACTCCTGAGAACCACCCTATCCATCTCCATGGCTATGATTTCTACATTGTTGCAGAGGGGTTCGGGAACTTCGACCCCAAGAAAGATAGGGCGAAATTCAACCTTGTTGATCCTCCTTTGAGGAACACAGTGGCTGTCCCTGTAAATGGATGGGCAGTTATTAGATTTGTTGCTGATAATCCAGGTGCATGGCTTATGCATTGTCACTTGGACGTCCACATAGGGTGGGGTTTGGCGACGGTGTTGTTGGTGGAGAACGGTGTTGGGAAATTGCAGTCCATAGAGCCTCCTCCGGTGGATCTTCCTCTTTGTTAG 1752 0.4954 MTILDNHYSSIFLATIFLLLTSALSAANAKIHAHEFVVEATPVKRLCKTHNAITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGQLYPFPKPNHDTPILLGEWWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSTKDTTTVPIHAGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLITADQPPSRYYMAARAYQSAQNAAFDNTTTTAILEYKSPHHGNHAQHHRSKGVKSKTRPIMPPLPAYNDTNTVTAFSRSFRSPRRVEVPTEIDQSLFFTVGLGLNKCPKNFKPNRCQGPNGTRFTASMNNVSFVLPNNVSILQAQYLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPIPGTKAHKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDRAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPVDLPLC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03267 583 NCBIfam laccase 29 583 IPR017761 GO:0046274|GO:0048046|GO:0052716
Viun1g03267 583 ProSitePatterns Multicopper oxidases signature 2. 546 557 IPR002355 GO:0005507
Viun1g03267 583 SUPERFAMILY Cupredoxins 158 359 IPR008972 -
Viun1g03267 583 Gene3D - 382 583 IPR008972 -
Viun1g03267 583 PANTHER MULTI-COPPER OXIDASE 31 568 IPR045087 -
Viun1g03267 583 MobiDBLite consensus disorder prediction 316 335 - -
Viun1g03267 583 SUPERFAMILY Cupredoxins 28 177 IPR008972 -
Viun1g03267 583 Pfam Multicopper oxidase 164 313 IPR001117 -
Viun1g03267 583 Pfam Multicopper oxidase 38 152 IPR011707 GO:0005507
Viun1g03267 583 CDD CuRO_1_LCC_plant 34 150 IPR034288 GO:0005507
Viun1g03267 583 CDD CuRO_3_LCC_plant 428 566 IPR034289 GO:0005507
Viun1g03267 583 SUPERFAMILY Cupredoxins 363 583 IPR008972 -
Viun1g03267 583 FunFam Laccase 20 150 - -
Viun1g03267 583 Gene3D - 162 361 IPR008972 -
Viun1g03267 583 ProSitePatterns Multicopper oxidases signature 1. 541 561 IPR033138 -
Viun1g03267 583 CDD CuRO_2_LCC_plant 166 312 IPR034285 -
Viun1g03267 583 FunFam Laccase 162 361 - -
Viun1g03267 583 Gene3D - 19 150 IPR008972 -
Viun1g03267 583 Pfam Multicopper oxidase 433 565 IPR011706 GO:0005507|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03267 Viun-Chr1 40376778 40379904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03267 K05909 - gmx:547704 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03267 1 40376778 40379904 Viun8g02390 8 33772417 33775672 PCT