Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03212 ATGAAACCAGAGAAAAACAGAGGCTCTTTTACCAAGAGAAGGGTGAAAATGAAAATTGAATCATTCAAGATCAAGATGTTAAATTTCCTGACCAAAAAGGATAAAGCTTGCAGGGAAGAACATCCTATGGACCTGAAGGAAGTCTTTTCGAAGTTTGCGGAAGGAGGGAGCCAAATGAACAAGGATCAGCTTCTTCGGTTCATTGAGGAGCAGCAGGGAGATAGTATCAGCGCAGAAGAGGATTTGGATAAAATAGTTGAGGATTTTTTTGTAGCACGGAGTTGTAGTTCTAGCTCTAAAACCAGATCTGCAAAATTTCCTGATGTGTACAGTAAAGAAGGGTTAACTCTCAATGACTTCGTGGATTTTCTCCTTCTGCATGATTTCAATGCTGCCTTGAATGATAAGGTACATCATGATATGAATGCTCCCATGTCACATTATTTTATGTATACGGGACACAATTCCTATCTGACTGGGAATCAAATTACTAGTGAGAGCAGTGACGCGCCAATTATCGAGGCTTTGAAACAAGGTGTACGAGTAATTGAACTAGATTTATGGCCATCTAAATCTGCAACTAAAGATGGCATTAAAGTGGTTCATGGAAGGACTTTTACCAGTCCAGTTGCCGTACGCAAATGTCTACAATCCATAAAGGAATATGCATTCTATAAATCAGATTACCCGGTAATTCTTACTTTGGAAGACCACCTAAAACCAAAACATCAGGATAAATTTGCAGAAATGGCATTTGAAATATTTGGAGAGATGCTTTATTGTCCCCCAACAGAGCCTTTGACAGAATTCCCCTCACCAGAATCATTAAAGAAACAGATAATTATATCAACCAAACCGCCAAAGGAATATCAGCAATCTGATAGTATCAGCAAAAGCAAAGCTGGGCCAAATGGATGTGAAAACCCTGAAGAACAATTTTTGGAACTGAAATTGTCAGATTCAGTGTCTAAAATGATAACTGGGGACAAGAATGCAAGTGGTGCAGATCGGGAAAATATAAACACAACCAATAGCATTCTAAACAAACAAGTTGTATTGCGATACAAACACTTGATCACAATCCATGGTGGGAAATCAAAAGGTTCCATCAAGGATCAACTAAAAGATGATACTAAAGTTAAACGGCTGAGTTTGAGTGAGAAGAAACTAAAAAGTGCTTCTGAGTCTCATGGAGCCGACCTTATTAGGTTCACACAGAAAAATATCCTCAGGGTTTATCCAAAAGGAGAACGTGTCAAATCCTCAAATTTCAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGAAAATCACTCCGGTTGATGCAGGGAATGTTCAGAGCAAATGGAGGGTGTGGCTATGTTAAAAAACCTGAATTTATAATCCGAACACTTCCAAATGACGAGGTGTTTGATCCTAAAAAACCACTGCCGGTGAAGCAGATCTTAAGAGTAAAAGTCTACAAAGGAGATGGTTGGCGTTTAGATTTCAGTCCAACACACTTCGATCGATTCTCTCCACCAGACTTTTACACAAAGGTGTGCATTGTTGGAGTGCCAGCTGATTGTGTGAAGAAGAGAACGGTTGCAAAGATGGATACATGGTATCCTGTTTGGGATGAAGAGTTTAAATTCGACTTGAGGGTCCCTGAGCTTGCTTTACTTCGGATAGAAGTGAAGGACGAAGATAAGGGAAAAGATGACTTTGCAGGACAAACTTGTTTGCCAGTAACAGAGCTAAGGCAGGGATTCCGGTCAGTCCCTCTGTTTGATCCCAAGGGAAAGAAACTGAAATCTGTCAAACTTCTAATGCGCTTCAAGATTGAAACTATAAATAACTTGTAG 1872 0.4001 MKPEKNRGSFTKRRVKMKIESFKIKMLNFLTKKDKACREEHPMDLKEVFSKFAEGGSQMNKDQLLRFIEEQQGDSISAEEDLDKIVEDFFVARSCSSSSKTRSAKFPDVYSKEGLTLNDFVDFLLLHDFNAALNDKVHHDMNAPMSHYFMYTGHNSYLTGNQITSESSDAPIIEALKQGVRVIELDLWPSKSATKDGIKVVHGRTFTSPVAVRKCLQSIKEYAFYKSDYPVILTLEDHLKPKHQDKFAEMAFEIFGEMLYCPPTEPLTEFPSPESLKKQIIISTKPPKEYQQSDSISKSKAGPNGCENPEEQFLELKLSDSVSKMITGDKNASGADRENINTTNSILNKQVVLRYKHLITIHGGKSKGSIKDQLKDDTKVKRLSLSEKKLKSASESHGADLIRFTQKNILRVYPKGERVKSSNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFIIRTLPNDEVFDPKKPLPVKQILRVKVYKGDGWRLDFSPTHFDRFSPPDFYTKVCIVGVPADCVKKRTVAKMDTWYPVWDEEFKFDLRVPELALLRIEVKDEDKGKDDFAGQTCLPVTELRQGFRSVPLFDPKGKKLKSVKLLMRFKIETINNL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03212 623 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 33 617 IPR001192 GO:0035556
Viun1g03212 623 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 384 470 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Viun1g03212 623 SUPERFAMILY PLC-like phosphodiesterases 139 471 IPR017946 GO:0006629|GO:0008081
Viun1g03212 623 ProSiteProfiles C2 domain profile. 473 600 IPR000008 -
Viun1g03212 623 Pfam Phosphatidylinositol-specific phospholipase C, X domain 141 285 IPR000909 -
Viun1g03212 623 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 491 616 IPR035892 -
Viun1g03212 623 CDD C2_PLC_like 489 618 - -
Viun1g03212 623 SMART plcy_3 355 471 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Viun1g03212 623 MobiDBLite consensus disorder prediction 289 308 - -
Viun1g03212 623 Gene3D Phosphatidylinositol (PI) phosphodiesterase 137 483 IPR017946 GO:0006629|GO:0008081
Viun1g03212 623 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 377 469 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Viun1g03212 623 SMART plcx_3 139 285 IPR000909 -
Viun1g03212 623 FunFam Phosphoinositide phospholipase C 486 618 - -
Viun1g03212 623 PRINTS Phospholipase C signature 430 448 IPR001192 GO:0035556
Viun1g03212 623 PRINTS Phospholipase C signature 170 190 IPR001192 GO:0035556
Viun1g03212 623 PRINTS Phospholipase C signature 409 430 IPR001192 GO:0035556
Viun1g03212 623 PRINTS Phospholipase C signature 584 594 IPR001192 GO:0035556
Viun1g03212 623 PRINTS Phospholipase C signature 144 162 IPR001192 GO:0035556
Viun1g03212 623 PRINTS Phospholipase C signature 269 286 IPR001192 GO:0035556
Viun1g03212 623 Gene3D - 25 136 - -
Viun1g03212 623 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 139 285 - -
Viun1g03212 623 Gene3D C2 domain 485 622 IPR035892 -
Viun1g03212 623 SMART C2_3c 491 598 IPR000008 -
Viun1g03212 623 Pfam C2 domain 491 592 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03212 Viun-Chr1 40007591 40011012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03212 21 618 Acyl Lipid Metabolism Gene Families AT2G40116 50.487 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03212 K05857 - gmx:100803435 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03212 1 40007591 40011012 Viun1g03212 1 40007591 40011012 ECH
Viun1g03212 1 40007591 40011012 Viun8g02333 8 33292170 33295776 PCT