Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03171 ATGACGGAGGAGAAACACGTGCGGAAAACACGTGTGGTCGACGTGGTTCTCGACTGCGTCATACCCTACATCGATGACCCTAAGGACCGGGACGCCGTTTCTCAAGTGTGTCGACGCTGGTACGAGCTCGACTCCCTCACCCGGAAGCACGTCACCATCGCCCTTTGCTACACCACAACGCCGGCACGCCTCCGACGTCGCTTCCCGCATCTGGAGTCACTTAAACTGAAGGGGAAACCCCGCGCCGCAATGTTCAACCTGATTCCCGAGGATTGGGGAGGCCACGTCACCCCCTGGGTTGAGGAAATCTCTCAGTACTTTGATTGCCTGAAGAGCCTCCACTTCCGCCGCATGATTGTCACTGATTCCGATCTTCTGCTCCTCTCTCGCTCCCGAGGTCACGTGCTGCACGCTCTCAAGCTTGACAAGTGCTCCGGTTTCTCCACAGATGGACTTCTTCATATTGGTCGCCTTTGCAAGAATTTGAGAGTTTTGTTTCTGGAGGAAAGTTCTATTGTTGAGAAGGACGGAGAATGGCTACACGAACTTGCTTCGAATAATACAGTTCTTGAGGATCTGAATTTTTATCTGACAGACATTGCTTGTATAAGGAATCAGGACCTTGAACTCCTGGCTAAAAATTGCCCGAACTTAGTGTCTGTGAAACTTACTGATTGTGAAATACTTGATCTTGTGAACTTCTTTAAGCATGCTTCTGCTCTAGAAGAGTTTTGTGGAGGCACCTACAACGCGGAACCAGAAAATTACTCTGCTATATCATTACCAGCAAAGTTATGTCGATTGGGTTTAACGTATATTGGAAAGAATGAGTTGCCCATAGTGTTCTTATTTGCAGGCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTGGACACGGAGGATCATTGTACCTTAATCCGAAAGTGTCCAAATCTGGAAGTCCTTGAGACGAGGAATGTAATTGGCGATAGAGGGTTAGAAGTTCTTGGTCGTTGTTGTAGGAGGCTAAAAAGGCTTAGGATTGAAAGGGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACCGTGTCTCATAGAGGGCTAATAGCCTTATCACAGGGCTGTTCAGAGCTTGAATACATGGCTGTTTACGTGTCCGATATAACAAATGCATCTCTGGAACATATTGGAACTCACTTGAAAAAACTATGCGATTTTCGCCTAGTGTTACTTGATCATGAAAAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGGGCTCTTCTGAGGGGCTGCGAGAAGCTGAAAAGATTTGCTCTGTATCTGAGGCGGGGGGGTTTGACTGATGCAGGTCTTGGTTACATAGGACAGTACAGTTCAAATGTTCGATGGATGCTGCTGGGGTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAATTCTCAAATGGGTGTCCTAATCTTCAGAAACTCGAAATGAGAGGGTGTTCTTTTTTCAGTGAGCGTGCACTTGCTGTGGCTGCAACGCGATTAACTTCTCTGAGGTACTTGTGGGTGCAAGGGTATGGAGCATCTTCATCTGGGCATGATCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGCCTAACCATCAGGATGAGACTGTAGTTGTTGAACATCCAGCTCATATTCTTGCCTATTATTCTCTTGCAGGCCAGAGATCAGATTTTCCAGATACTGTCGTGCCTTTGGAAGCTGCCACGCGTGTTGTTGACGCCTAG 1770 0.4712 MTEEKHVRKTRVVDVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVEEISQYFDCLKSLHFRRMIVTDSDLLLLSRSRGHVLHALKLDKCSGFSTDGLLHIGRLCKNLRVLFLEESSIVEKDGEWLHELASNNTVLEDLNFYLTDIACIRNQDLELLAKNCPNLVSVKLTDCEILDLVNFFKHASALEEFCGGTYNAEPENYSAISLPAKLCRLGLTYIGKNELPIVFLFAGVLKKLDLLYAMLDTEDHCTLIRKCPNLEVLETRNVIGDRGLEVLGRCCRRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGTHLKKLCDFRLVLLDHEKKITDLPLDNGVRALLRGCEKLKRFALYLRRGGLTDAGLGYIGQYSSNVRWMLLGYVGESDAGLLEFSNGCPNLQKLEMRGCSFFSERALAVAATRLTSLRYLWVQGYGASSSGHDLLAMARPFWNIELIPSRKVPNHQDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLEAATRVVDA 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03171 589 Gene3D - 2 48 - -
Viun1g03171 589 SMART LRR_CC_2 480 505 IPR006553 -
Viun1g03171 589 SMART LRR_CC_2 428 454 IPR006553 -
Viun1g03171 589 SMART LRR_CC_2 370 394 IPR006553 -
Viun1g03171 589 SMART LRR_CC_2 133 158 IPR006553 -
Viun1g03171 589 SUPERFAMILY RNI-like 361 517 - -
Viun1g03171 589 SUPERFAMILY RNI-like 87 399 - -
Viun1g03171 589 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 28 249 - -
Viun1g03171 589 FunFam Coronatine-insensitive protein 1 49 583 - -
Viun1g03171 589 CDD F-box_AtTIR1-like 14 48 - -
Viun1g03171 589 Pfam F-box 10 50 IPR041567 -
Viun1g03171 589 Gene3D Ribonuclease Inhibitor 49 584 IPR032675 -
Viun1g03171 589 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03171 Viun-Chr1 39748905 39753460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03171 K13463 - gmx:732662 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03171 1 39748905 39753460 Viun1g03171 1 39748905 39753460 ECH
Viun1g03171 1 39748905 39753460 Viun8g02288 8 32886457 32891509 PCT