Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03160 ATGCGAAAAGAGATGGCTTCAGCCACCACATTTTCCCTAATGTTACACTTTCTGTTGTTAATATTATGTTCTTCGTTTCATCAACCAAGCTCAGCATTCACATCGCAAGAGTACCAGGAGGCTCTTGAGAAATCCATTCTCTTCTTTGAGGGACAACGGTCTGGAAAATTGCCTTCCAACCAGCGACTAACATGGAGGGGAGATTCTGGATTGTCCGATGGCTCTTCATATCATGTAAACCTGGTAGGTGGTTATTATGATGCTGGAGATAACGTTAAGTTTGGGTTGCCAATGGCCTTTACTACTACATTGTTAGCATGGAGTGTGATTGAATTTGGAAGCTCGATGATGGAGCAGATTGAAAACGCTAGAGCTGCTATCCGCTGGAGCACAGATTACCTTCTTAAGGCTGCCACTACCACCCCTGACACATTATATGTCCAAGTAGGAGACCCGAACATGGATCACAAGTGTTGGGAAAGGCCTGAAGATATGGACACTCCACGTAATGTATATAAGGTATCAGCTCAAAACCCAGGATCAGATGTAGCAGCAGAAACGGCAGCTGCACTGGCAGCTTCTTCAATAGTCTTCAGAGATTCGGATTCAGCATATTCCTCCAAATTGCTTCAAGCAGCCATCAAAGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTACAGTGATTCTCTTGGTTCTGTTGTCTGTCCATTCTACTGCTCTTACTCCGGATACCATGATGAACTTCTGTGGGGTGCATCATGGATTTATAAAGCCTCAGGAACTAGCTCGTACATGCAATATATTCGATCCAATGGCCACATTTTAGGCGCCGATGACGATGGTTTCTCCTTCAGCTGGGATGACAAGCGACCCGGAACTAAAATCCTCCTTTCCAAGGAATTCTTGGAGAAAAATTCAGAAGAGTTCCAATTATACAAGGCACATTCAGATAATTACATTTGCTCGCTAATGTCTGGAATACCTGGTTCTCAGGCTCAGTACACTCGAGGGGGGCTTCTTTACAAGGGGAGTGAGAGCAATTTACAGTACGTGACATCGACAAGTCTCCTTCTGTTGACATACGCTAAGTATCTTTCTGCAAACGGGGGCAGTGTGAGATGTGGGACTTCAACGGTCACGGGTGACAACCTCGTAAACCTAGCCAAAACACAAGTTGATTACATTTTGGGAGATAATCCAAGAAAGATGTCTTATATGGTGGGTTTTGGGGAGCAGTACCCAAAGCATGTCCACCACAGGGGTTCCTCTCTACCTTCGGTTCGTGCCAGGACTCAGCACATTTCCTGCAACGAAGGGTTTCAGTATCTGTATTCAGGCTCTCCCAATCCAAATGAGCTTGTTGGAGCCATAGTTGGTGGTCCTGACAGCAATGATAACTTTTCCGATGATCGAAACAACTATCAGCAATCAGAACCAGCAACGTACATCAATGCACCCTTTGTAGGTGCTGTTGCCTATTTCTCTGCTAAACAATAG 1500 0.4493 MRKEMASATTFSLMLHFLLLILCSSFHQPSSAFTSQEYQEALEKSILFFEGQRSGKLPSNQRLTWRGDSGLSDGSSYHVNLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMMEQIENARAAIRWSTDYLLKAATTTPDTLYVQVGDPNMDHKCWERPEDMDTPRNVYKVSAQNPGSDVAAETAAALAASSIVFRDSDSAYSSKLLQAAIKVFNFADRYRGSYSDSLGSVVCPFYCSYSGYHDELLWGASWIYKASGTSSYMQYIRSNGHILGADDDGFSFSWDDKRPGTKILLSKEFLEKNSEEFQLYKAHSDNYICSLMSGIPGSQAQYTRGGLLYKGSESNLQYVTSTSLLLLTYAKYLSANGGSVRCGTSTVTGDNLVNLAKTQVDYILGDNPRKMSYMVGFGEQYPKHVHHRGSSLPSVRARTQHISCNEGFQYLYSGSPNPNELVGAIVGGPDSNDNFSDDRNNYQQSEPATYINAPFVGAVAYFSAKQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03160 499 Pfam Glycosyl hydrolase family 9 38 491 IPR001701 GO:0004553|GO:0005975
Viun1g03160 499 FunFam Endoglucanase 34 499 - -
Viun1g03160 499 Gene3D - 34 499 IPR012341 GO:0005975
Viun1g03160 499 SUPERFAMILY Six-hairpin glycosidases 15 496 IPR008928 GO:0005975
Viun1g03160 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Viun1g03160 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 468 486 IPR033126 -
Viun1g03160 499 PANTHER ENDO-1,4-BETA-GLUCANASE 16 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03160 Viun-Chr1 39725070 39727590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03160 35 496 Glycoside Hydrolase AT1G02800 64.286 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03160 - - var:108328044 951.044