Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03105 ATGGCGAACCCAGAGGGTAGTAGCAGAGGTTCAAGATGGTCACTTAAGGGAATCACTGCTCTCGTTACTGGAGGCACACGTGGAATCGGGCATGCTGTGGTGGAGGAACTGGCGGAGTTTGGTGCCACGGTGTACACTTGTTCCAGGAATGAAGAGGAGCTGAATGCACGCTTGAAGGAATGGAAAGAGAAAGGGTTTTTAGTTTCTGGGTCGGTTTGTGATGTGACTTCCCCAGCCCAAAGAGAGAACCTCATTAAGCAAGTGGACTCTGCCTTCAACGGCAAGCTCAACATACTTGTAAACAATGTGGGAACAACTGTGAGGAAACCAACAATAGAGTATAGTAGTGAAGATTATTCAAAATTGATGGCAATTAACTTGGACTCTGCATACCATCTGAGCCAACTTGCATATCCTCTTCTTAAAGCATCTGGCAATGGAAGTATTGTGTTCATTTCCTCTGTTGCAGGTCAGACAAGTGCAGCTTCTGGAGCCATTTATGCAGCAAATAAAGCTGCAATTGATCAGCTTTCTAGATATCTTGCTTGTGAATGGGCGAATGACAATATAAGGAGCAACAGTGTTGCACCCTGGTATACCAACACATCAATTCATACGCAGTTGCTTGCAAATAAGGAAATTGTTAACGAGATAATATCTCGAACGCCAATAAAGCGAATTGCAGAAGCACATGAAGTGTCATCTTTGGTGACTTTCCTTTGCTTGCCAGCAGCTTCTTACATTACTGGACAAGTTATTTGTGTTGATGGAGGATTTACTGTGTATGGATTTCAGCCCAGCATGAGAATTAATTGA 816 0.4363 MANPEGSSRGSRWSLKGITALVTGGTRGIGHAVVEELAEFGATVYTCSRNEEELNARLKEWKEKGFLVSGSVCDVTSPAQRENLIKQVDSAFNGKLNILVNNVGTTVRKPTIEYSSEDYSKLMAINLDSAYHLSQLAYPLLKASGNGSIVFISSVAGQTSAASGAIYAANKAAIDQLSRYLACEWANDNIRSNSVAPWYTNTSIHTQLLANKEIVNEIISRTPIKRIAEAHEVSSLVTFLCLPAASYITGQVICVDGGFTVYGFQPSMRIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03105 271 FunFam Short-chain dehydrogenase reductase 5 265 - -
Viun1g03105 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Viun1g03105 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Viun1g03105 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Viun1g03105 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 263 IPR036291 -
Viun1g03105 271 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Viun1g03105 271 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Viun1g03105 271 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Viun1g03105 271 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Viun1g03105 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Viun1g03105 271 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Viun1g03105 271 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Viun1g03105 271 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Viun1g03105 271 Gene3D - 8 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03105 Viun-Chr1 39350311 39352334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03105 12 266 Miscellaneous Gene Families AT2G29290 62.257 1.58e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03105 K08081 - gmx:100819646 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03116 1 39403322 39404922 Viun1g03105 1 39350311 39352334 ECH
Viun1g03105 1 39350311 39352334 Viun1g03105 1 39350311 39352334 ECH