Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03100 ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAACTCTTTTGAACCTGAATGGATCTGGAAGCGGAGCTTCAGCTCCCAGTTCAGCTTTCTTTGGCACAAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCTAACAGCAAGGCGACCAATGGAAGCTTCAAAATTGTTGCTGCTGATAATGAGACTGAGGAGACCAAGCAGACCAAAAAGGACAGATGGGCGGGTCTGGCCTACGATATTTCTGATGACCAACAAGACATCACAAGGGGGAAGGGTATGGTTGATCCTCTTTTCCAAGCTCCAATGAATGCTGGAACTCACTATGCAGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTCAAAACGTACAACTTCGACAACATGAAGGATGGTTATTACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCTTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCGTGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCCGGAGAGCCAGCAAAATTGATCAGGCAGAGATACCGTGAAGCTGCAGACATAATCAAGAAGGGAAAGATGTGTGCTCTGTTCATCAACGATCTTGATGCAGGAGCAGGTCGTCTTGGTGGAACCACCCAATACACTGTGAACAACCAGATGGTGAATGCCACTCTCATGAACATTGCTGATAACCCTACAAATGTGCAGCTTCCTGGTATGTACAACAAGGAAGAGAACCCCCGTGTGCCCATCATTGTCACTGGTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGAGTTGGTGTTTGCAAGGGAATTTTCCGCACCGATGGTGTTCCTGAAGAGGAAGTTACCAAGCTTGTTGACACTTTCCCAGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTGTATGATGATGAAGTGAGGAAGTGGGTTTCTGGTGTTGGTGTTGATGGTATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAACCTTTGAACAGCCCAAGATGAGTCTGGACAAGCTCTTGCAGTATGGTAACATGCTTGTCCAAGAACAAGAAAATGTGAAGAGAGTCCAATTGGCTGACAAGTACTTGAATGAGGCTGCTCTTGGAAATGCTAACGAAGATGCTATTAAGAGTGGATCTTTCTTCGGCAAAGCAACCCGGCAAGTAAATATTTCTGTCCCTGATGGTTGTGCTGGTCCAAGTGCTAGCAATTGTGATGGCACTTGTGTATTACATTCTTAG 1416 0.4696 MAASVSTVGAVNRTLLNLNGSGSGASAPSSAFFGTSLKKVIASRVPNSKATNGSFKIVAADNETEETKQTKKDRWAGLAYDISDDQQDITRGKGMVDPLFQAPMNAGTHYAVMSSYEYLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVDGIGKKLVNSKEGPPTFEQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFFGKATRQVNISVPDGCAGPSASNCDGTCVLHS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03100 471 Pfam ATPase family associated with various cellular activities (AAA) 167 308 IPR003959 GO:0005524|GO:0016887
Viun1g03100 471 Gene3D - 312 424 - -
Viun1g03100 471 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 312 424 - -
Viun1g03100 471 PANTHER - 15 436 IPR044960 -
Viun1g03100 471 Gene3D - 127 311 IPR027417 -
Viun1g03100 471 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 127 311 - -
Viun1g03100 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03100 Viun-Chr1 39316746 39319964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03100 - - gmx:100789921 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03100 1 39316746 39319964 Viun1g03100 1 39316746 39319964 ECH