Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03097 ATGACATTAGTTTTCTCCGAACGATTTATGGTGTCATGTGAAACAGATGGGACACAACTCATAGTGGTGAACAACTGCAAAGAAAGTGTATGGCCTGCGATTCTCGGCAATGGAGGGCACCCTTCACCAAAACATGGCGGGTTTTATCTCGGAAGCGGCGAAGAGGTTGTTGTGCAAGTCCCGGAGGGTTGGTCAGGGAGAATCTGGGGCAGACAAGGGTGTTTCTTCGACCAACAAACAGGCAAAGGTTGTTGTGAAACAGGAGATTGTGGAGGCTTATTGCAATGCAATGGAATCGGTGGAGTCCCTCCTGCAACCCTAGTAGAAATGACTCTAGGAACCTCAAAATCCGCGTTGCATTTCTATGATGTTAGTTTGGGCGATGGGTTTAACCTTCCTGTGTCAATGAAGGCACTGAGTGGTAGTGGTGGAGGTTGTGGTGTTGCTTCCTGTGAAGCTAACTTGAACGTTTATTGCCCTTCAGCTTTGGTTGTGGAGAGGAATGGGAAGGTTGTGGGGTGCAAGAGTGCTTGTTTGGCAGCAAAGTCAGATAGGTATTGCTGCACTGGTCACTTTGCTACAAAATGCAAGCCAACTGTGTTTGCTCTTCTCTTCAAGACCGTTTGCCCTAATGCTTATAGCTATGCTTATGATGATTCACCGGTGCTCAACACTTGCGTGGCACCTCGCTATGTCATTACATTTTGCCCTCTACATTGA 720 0.4736 MTLVFSERFMVSCETDGTQLIVVNNCKESVWPAILGNGGHPSPKHGGFYLGSGEEVVVQVPEGWSGRIWGRQGCFFDQQTGKGCCETGDCGGLLQCNGIGGVPPATLVEMTLGTSKSALHFYDVSLGDGFNLPVSMKALSGSGGGCGVASCEANLNVYCPSALVVERNGKVVGCKSACLAAKSDRYCCTGHFATKCKPTVFALLFKTVCPNAYSYAYDDSPVLNTCVAPRYVITFCPLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03097 239 FunFam Thaumatin-like protein 1a 18 237 - -
Viun1g03097 239 SMART tha2 20 237 IPR001938 -
Viun1g03097 239 ProSitePatterns Thaumatin family signature. 81 96 IPR017949 -
Viun1g03097 239 ProSiteProfiles Thaumatin family profile. 20 239 IPR001938 -
Viun1g03097 239 PRINTS Pathogenesis-related protein signature 19 31 IPR001938 -
Viun1g03097 239 PRINTS Pathogenesis-related protein signature 227 236 IPR001938 -
Viun1g03097 239 PRINTS Pathogenesis-related protein signature 120 136 IPR001938 -
Viun1g03097 239 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Viun1g03097 239 SUPERFAMILY Osmotin, thaumatin-like protein 19 237 IPR037176 -
Viun1g03097 239 PANTHER OS03G0233200 PROTEIN 13 237 IPR001938 -
Viun1g03097 239 CDD TLP-PA 19 236 - -
Viun1g03097 239 Gene3D Thaumatin 19 237 IPR037176 -
Viun1g03097 239 PIRSF PR5 1 239 IPR001938 -
Viun1g03097 239 Pfam Thaumatin family 24 237 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03097 Viun-Chr1 39301680 39302618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03097 19 237 Receptor kinase-like Gene Family AT5G38280 41.410 1.20e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03097 - - gsj:114381056 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03097 1 39301680 39302618 Viun1g03097 1 39301680 39302618 ECH