Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03068 ATGGAAGAAAGCCCTCGAGCTAGCAGAAAGCGAAGCCACCCTTTTTCTTCTTCTTCTCCGTCTCCTCCACTCTCCAAGCGCCCCAATTTCCCTTCCTTCCAAGACATCCCCAATCTTCCTTCCAACATCAAATCCCTCTGTCACCTCATTGCCACTACCTCCGCCGCCGCCATCGAGCACGCCCTCGAATGCGCCGCAGTCATCATCACCCCTCACGACGTCGAGGAAGTCCTCAGACTCTCCTACGGCTTTCCAGGCCAGGCCGTCAAATTCTTCCGGTGGAGCGGCCGCCAACTCCACGACAAACACACTCCCTATTCCTGGAACCTTGTGGTCGACCTTTTGGGCAAGAATCGCTTCTTCGACGCGATGTGGGACGCTATTAAGTCAATGCAGAAAGAAGGGCTACTCTCGCTGGCCACGTTCGCCTCTGTCTTCGGGAGCTACGTCATCGCCAACAGAACCCGGGAAGCGATAATGGCGTTTGAGGTTATGGAGAATTACGGTGTTGTGAGGGACGTGATTGCTTTGAACTCATTGTTGAGTGCAATTTGTAGGGATGGTAGGACAGTTGATGCTTGTGATTACTTGCAGATTGCTAAGAAATTTGTCCGGCCGGATGCCGATTCTTACGCGATTTTGATGGAGGGATGGGAGGGAGAAGGAGATAAGGGTGTGTTTGGTGCGAAGGAGACTTTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCCAATGTGCCTGCTTATGATTCATTCCTGTGTGCCCTTGTTAGAGGGCCTGATGGATTGCTGGAGGCTATTAAGTTTGTTGATTCGATGAGGGATAGGAGGTGTTACCCTGGTGTGAGGTTCTTGAAGGTTGCATTGGATGAGTGTGTCAAGTTTCATGATGCTAGGACTGCAAAGTTTTTCTGGGAGGTGTTGGTGGAGGTGGGGAGGGTGTTGCAACCCACCACGGAGATGTACAATTTGATGATTGCTTTGTTTTGTTATTGTGGTGATACTGATTCTGCGAGGAGGATGCTTGATGAAATGGGGAGGAAGTTGAGGGAGGCGTCTGCAGTGTTTACTGAGATGGTGAAGAACGAGTTCGTGCCGGATCAGGATAACTGTGATACTGCGGTTAAGGTATATGTGGATGGTGGGGAGCCTCTTTTGGCGATTAAGGTTTGGAAGTGTTTGGTTGAGAATTATCAGAATGATTTGGAGCGGACTGCGAATTTTCTGGTGGTGGGGCTTCGTGATTTGAATAGGGTTCCGGAGGCGGTTAAGTATGCCGAGGATATGATTGAGAGAGGAATCAGGTTGTCCTCTTCCACACTGTCAAAGCTGAGACAAACCCTTGTCAAGGAAAGAAAGGAATTTGTGTATGAAGAACTTTTGAGAAAGTGCAAATCTCAATAA 1407 0.494 MEESPRASRKRSHPFSSSSPSPPLSKRPNFPSFQDIPNLPSNIKSLCHLIATTSAAAIEHALECAAVIITPHDVEEVLRLSYGFPGQAVKFFRWSGRQLHDKHTPYSWNLVVDLLGKNRFFDAMWDAIKSMQKEGLLSLATFASVFGSYVIANRTREAIMAFEVMENYGVVRDVIALNSLLSAICRDGRTVDACDYLQIAKKFVRPDADSYAILMEGWEGEGDKGVFGAKETFAEMVIEIGWDPANVPAYDSFLCALVRGPDGLLEAIKFVDSMRDRRCYPGVRFLKVALDECVKFHDARTAKFFWEVLVEVGRVLQPTTEMYNLMIALFCYCGDTDSARRMLDEMGRKLREASAVFTEMVKNEFVPDQDNCDTAVKVYVDGGEPLLAIKVWKCLVENYQNDLERTANFLVVGLRDLNRVPEAVKYAEDMIERGIRLSSSTLSKLRQTLVKERKEFVYEELLRKCKSQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03068 468 Gene3D Tetratricopeptide repeat domain 350 468 IPR011990 GO:0005515
Viun1g03068 468 Gene3D Tetratricopeptide repeat domain 196 349 IPR011990 GO:0005515
Viun1g03068 468 Gene3D Tetratricopeptide repeat domain 77 190 IPR011990 GO:0005515
Viun1g03068 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Viun1g03068 468 MobiDBLite consensus disorder prediction 1 31 - -
Viun1g03068 468 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 8 454 - -
Viun1g03068 468 Pfam PPR repeat 322 348 IPR002885 -
Viun1g03068 468 Pfam PPR repeat 106 136 IPR002885 -
Viun1g03068 468 NCBIfam pentatricopeptide repeat 106 136 IPR002885 -
Viun1g03068 468 NCBIfam pentatricopeptide repeat 322 346 IPR002885 -
Viun1g03068 468 Coils Coil 458 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03068 Viun-Chr1 39025684 39027152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03068 156 464 Miscellaneous Gene Families AT4G11690 20.606 2.86e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03068 - - vun:114191149 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03068 1 39025684 39027152 Viun1g03068 1 39025684 39027152 ECH