Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03047 ATGGCCAAGCATTTTCTTCTTCTTCTTCTTTTTGCAGTATATGTCGCTGCAATTGATGAAGAACCATTCATTGGGGTGAACATTGGAAGAGATCTCTCAGATATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCTCAGCAAATTCGACATGTTCGGTTGTATGATGCTGACCAAGCCATGCTCATTGCCCTTGCAAACACAGGAATTCAAGTTGCTGTGTCTGTTCCTAATGAAGAGATACTAGCAATCGGTCAATCAAACACCACTGCTGCTAAGTGGGTTTCGCGTAATGTGGTGGCTCATTACCCTGCCACTAACATAACATCAATCTGTGTCGGCTCTGAGGTTTTAACTGCCCTCCCCAATGCGGCAAAAGTCCTTGTTAGTGCCCTTAAGTTCATTCATTCAGCCCTTCTGGCGTCAAATCTTGATAACCAAATTAAAGTTTCAACACCCCTTTCTTCTTCCATGATCCTTGACTCATTTCCACCTTCACAAGCCTTCTTCAACCGCTCGCTGAATCCAGTCTTGGTTCCAATGCTTGATTTCTTGCAATCCACTGGCTCTTATCTAATGCTCAACACCTACCCTTACTATGACTACATGAAATCAAATGGTGTGTTCCCGTTGGACTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGTCATCGATTCTAACACCCTTCTCCACTACTCCAACGTGTTTGATTCTGTGATCGATGCAGCGTACTTTGCCATGGCTTTTCACAACTACACCAACATTCCTGTGGTGGTGAGTGAAACAGGGTGGCCCTCAAAAGGTGACTCTAATGAACCAGATGCAACAGTGGAAAATGCCAATACCTACAACAGCAATTTGATCAAGCATGTGCTTAACGTGACCGGAACTCCCAAACACCCCGGCATTGGTGTTAGTGCTTACATATACGAGCTCTACAATGAGGATGCAAAGGCCGGTTCATTGTCCGAGAAGAACTGGGGTTTGTTTGACGCAAATGGGAAACCTGTTTATGTTTTACAGTTAACAGAATCTGGAGGAGTGCTTGCAAATGACACCACCAATCAAACTTATTGTGTTGCAAAAGATGGTGCTGATCCCAAGATGCTGCAAGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGTGGATTGTTCTCCTCTGATGCAGGGAGAAGCATGTTACGAACCAGACAACGTAGTTGCACATGCAAATTATGTTTTTGACACTTACTTTCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGACATGGCTACAATCTCCACCACCAATCCTAGTCATGGATCTTGTGTGTTTCCAGGAAGTGGCAACAATGGCACCTTCCCTAACGTCACATTATCATCAATGAATTCCACAAACTCAGATTCTTCTGCGTGGAATCTGCATCATGGGGAATTAGGAATCAGAAGCCTTGTAATGATGATGGTACTTCTGCTCACGGGAGTGGTTTGGCTATAA 1497 0.4442 MAKHFLLLLLFAVYVAAIDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTGIQVAVSVPNEEILAIGQSNTTAAKWVSRNVVAHYPATNITSICVGSEVLTALPNAAKVLVSALKFIHSALLASNLDNQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMLDFLQSTGSYLMLNTYPYYDYMKSNGVFPLDYALFKPLPPNKEVIDSNTLLHYSNVFDSVIDAAYFAMAFHNYTNIPVVVSETGWPSKGDSNEPDATVENANTYNSNLIKHVLNVTGTPKHPGIGVSAYIYELYNEDAKAGSLSEKNWGLFDANGKPVYVLQLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCSPLMQGEACYEPDNVVAHANYVFDTYFHQMGKSPQSCDFNDMATISTTNPSHGSCVFPGSGNNGTFPNVTLSSMNSTNSDSSAWNLHHGELGIRSLVMMMVLLLTGVVWL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03047 498 Pfam Glycosyl hydrolases family 17 24 344 IPR000490 GO:0004553|GO:0005975
Viun1g03047 498 Pfam X8 domain 361 432 IPR012946 -
Viun1g03047 498 FunFam Glucan endo-1,3-beta-glucosidase 3 23 348 - -
Viun1g03047 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 433 IPR044965 GO:0004553|GO:0005975
Viun1g03047 498 FunFam Glucan endo-1,3-beta-glucosidase 4 355 449 - -
Viun1g03047 498 Gene3D - 354 448 - -
Viun1g03047 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Viun1g03047 498 SMART X8_cls 360 445 IPR012946 -
Viun1g03047 498 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Viun1g03047 498 Gene3D Glycosidases 23 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03047 Viun-Chr1 38902074 38905314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03047 19 490 Glycoside Hydrolase AT1G66250 71.579 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03047 K19891 - gmx:100811077 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03047 1 38902074 38905314 Viun1g03047 1 38902074 38905314 ECH