Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02976 ATGGCAATGACATTTGAAACGGGTCGTTTATACCTATCGCGCCCAACGGCCTCAAAGCACTTGTTATTCTCCGCCATTATCAAACGACCAAAACTCGTTCCTTCTTCTCGGTTCTTCCATTGCCGATCAAGACGCTTCGTTTTGACGCAGAAATTCGCAGTGAAAGCCTGCGCGGTGAAAGTCGAGCAGAAGAACGTCGCTGCGGAATCAGGAGAGTGGGGGAATGTTTCGGCAGTGCTCTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCTAGAAAAGCCGGCGTCGATTTGTTCGCCGAGATGGGCGTCGAAGTCACCGTCGACGATTTTGTGCCGTTTACGGGAACCGGAGAAGCTAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTTTGCAAAACCAGATTCTGGAATTGGATTTCCGGGTGCTCTTGAACTCATTTCTCAGTGTAAAAGTAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCGATTGTCTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCGAGAATATTGAATGTGCCCCGATAATATAATATGTATTCTCAGTGTATTGTTATAGAAGATGCGCTAGCTGGAGTGCAAGCTGCCAAAGCTGCGCAAATGAGATGCATAGCTGTAAGGACCTCAATATCAGATGAAGTTTTAGAATCTGCAGAGCCATCATTTATCCGGGATGACATAGGAAGTGTTTCACTTGAGGATATTCTCTATGGTGGCACTGTTGGATATAATGAGAGGATGCAGGGCTTTGAAACTGTAAATAATTTTGCAGAGTCTTCATCTGCTGTGCTTGATGGAGGGTTGCAGGGTTCTCGGCGAGATATACTGAGATTTGGAAGTCTGGGCATTGCTATCTCTTGCCTTATCTTCACCTTAAATAACTGGAAGGCAATGCAATATGCTTCTCCGAAAGCAGTTTGGAATCAGTTGTTTGGTGCTGCCCTGCTACCCTTGGAGCAGAAAGATAACTCAAGATATGATAGGATCCAGCAATTTGTGAATTACATTTCTGATCTGGAAAGCAGGGGAAATGCTCAGATAGTTCCAGAATTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTTTTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACTTAGATGCTTTGGAGAAAAAATACAAAGATATGCCGTTTGTTGTTGTGGGTGTTCATTCTGCAAAGTTTGATAACGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGAATTTCTCACCCGGTTGTCAATGACGGAGACATGTTTCTTTGGAGGAACTTGGGTATAAATTCATGGCCAACATTTGCTATAGTTGGCCCTGATGGTAAGCTTCTTGCACAACTAGCAGGAGAGGGTCACAAGAAGGATCTAGATGATTTTTTGGAGGCTGCACTTCTATATTATGGAAAGCAGAACAAGCTGGACAATACGCCAATTTCCTTGAGTTTGGAGAAAGATAATGATCCCCGCCTGTTGACCTCCCCATTAAAGTTTCCTGGAAAGCTAGCAGTTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAATCGCATAGTGGTTACTGACCTTGATGGGAATTTTATCGTACAAATCGGGAGCAGTGGGGAGGAAGGTTTGAACGATGGTTCTTTTGATGATGCTACTTTTAACCGTCCTCAGGGCCTTGCTTATAATGCAAAGAAAAACATCCTTTATGTTGCAGACACTGAAAACCATGCTCTGAGGGAAATTGATTTCGTTAATGAGAAAGTGCGGACCCTTTCTGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGGCACACAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTCGAAGAAAAAATTTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTAGAGGAAACTTCCAGAGCATTTAGTGGTGATGGCTATGAAAGAAACTTAAATGGATCAAGTTCTACAAACACGTCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGATCTAAGTAAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTGGATCTGAAAACAGGAGGATCACAGTTGTTAGCTGGTGGTGACCCAATGTTTGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGATGTACTCCTTCAACATCCATTGGGAGTTATGTGTGCAAATGATGGTGAAATTTATATCGCAGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAACGGCTGTAAAAGCTCAGCTCTCTGAACCGGCAGGAATTGTTGAAGGGAACAAGGGGAGATTATTTATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACGCTGATGAAACTGAACTCCGTACCTTGGAGCTTAAAGGAGTTCAGCCTCCTAAACCAAAATCAAAATCTTTTAAACGTCTTAGACGACGAGCATCAGCCGACACAGTGCCAATTCCGATTGATGCCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAGCGAGTATCATTTCTCAAAGGAAGCACGGAGTAAATTCAGCGTGGATATTGAACCTGAAGATGCTGTAAACATTGAACCCCTCGATGGATTCCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAGTGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCCAGAGGGTGTTTCTAGCCCTGCCAAAGCAGACGTCACTCTCGCACATTTTGTGAAACCCAAAACTTCAACCACCAACTTACTGCAGACAGTTGCCCCGTGA 3207 0.4269 MAMTFETGRLYLSRPTASKHLLFSAIIKRPKLVPSSRFFHCRSRRFVLTQKFAVKACAVKVEQKNVAAESGEWGNVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGVEVTVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKFAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPRXYNMYSQCIVIEDALAGVQAAKAAQMRCIAVRTSISDEVLESAEPSFIRDDIGSVSLEDILYGGTVGYNERMQGFETVNNFAESSSAVLDGGLQGSRRDILRFGSLGIAISCLIFTLNNWKAMQYASPKAVWNQLFGAALLPLEQKDNSRYDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDALEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGINSWPTFAIVGPDGKLLAQLAGEGHKKDLDDFLEAALLYYGKQNKLDNTPISLSLEKDNDPRLLTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLNDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLSGNGTKGSDYVGGGKGGTQLLNSPWDVCFHPFEEKIYIAMAGQHQIWEHNLLEETSRAFSGDGYERNLNGSSSTNTSFAQPSGLSLSQDLSKIYIADSESSSIRAVDLKTGGSQLLAGGDPMFADNLFKFGDQDGIGSDVLLQHPLGVMCANDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPAGIVEGNKGRLFIADTNNSLIRYLDLNADETELRTLELKGVQPPKPKSKSFKRLRRRASADTVPIPIDAISSNEGNLSIKISLPSEYHFSKEARSKFSVDIEPEDAVNIEPLDGFLSPEGSATLHFKRSSNSASVGRINCKVYYCKEDEVCLYQSLLFEVPFPEGVSSPAKADVTLAHFVKPKTSTTNLLQTVAP 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02976 1068 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 76 289 - -
Viun1g02976 1068 NCBIfam HAD-IA family hydrolase 204 267 IPR006439 -
Viun1g02976 1068 SUPERFAMILY NHL repeat 573 900 - -
Viun1g02976 1068 Pfam Thioredoxin-like 432 526 IPR012336 -
Viun1g02976 1068 CDD HAD_BPGM-like 78 269 - -
Viun1g02976 1068 ProSiteProfiles Thioredoxin domain profile. 403 549 IPR013766 -
Viun1g02976 1068 Pfam NHL repeat 635 660 IPR001258 GO:0005515
Viun1g02976 1068 SFLD Haloacid Dehalogenase 76 289 - -
Viun1g02976 1068 FunFam NHL repeat-containing protein 2 387 551 - -
Viun1g02976 1068 SUPERFAMILY Thioredoxin-like 407 545 IPR036249 -
Viun1g02976 1068 CDD NHL-2_like 617 958 IPR045302 -
Viun1g02976 1068 Pfam Haloacid dehalogenase-like hydrolase 79 267 IPR041492 -
Viun1g02976 1068 SUPERFAMILY HAD-like 77 290 IPR036412 -
Viun1g02976 1068 Gene3D - 553 722 IPR011042 -
Viun1g02976 1068 Gene3D - 795 897 IPR011042 -
Viun1g02976 1068 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 206 222 IPR006439 -
Viun1g02976 1068 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 76 87 IPR006439 -
Viun1g02976 1068 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 174 187 IPR006439 -
Viun1g02976 1068 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 102 1066 - -
Viun1g02976 1068 Gene3D Glutaredoxin 379 552 - -
Viun1g02976 1068 SMART LY_2 572 614 IPR000033 -
Viun1g02976 1068 Gene3D Putative phosphatase; domain 2 89 160 IPR023198 -
Viun1g02976 1068 FunFam NHL repeat-containing protein 2 564 720 - -
Viun1g02976 1068 Gene3D - 78 273 IPR023214 -
Viun1g02976 1068 ProSiteProfiles NHL repeat profile. 815 845 IPR001258 GO:0005515
Viun1g02976 1068 FunFam Chloroplast protein HCF243 795 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02976 Viun-Chr1 38433377 38449125 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02976 - - gmx:100795843 1890.16