Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02971 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACCAGTTCTCCGGTGAGAAAGCGGCACAAGTCTCGGAACTCCAAATCTAAACGTGAGGGTGGTGCGGCATTCTCCGATGGTGGAAGCCATTCTAGAGAAGAAGACTCTGATGAGGGTGCAAACAAGAAACCACAGAGGTATTCATCCCATGTTCCACTGAAGAAGAGATTAGACGTCAGCAGAAGAAGTAGTAATAATAGTATTCGCAATGAGCATGGTGGGGGTGACTTGGAGGATGGAGCTCCTGATAGAGATGGTGGTAGCAGTGAAGAATCTGACGTTGGCAGTGATCTCTACAAGAACGAAGACGACAAACAGAAGCTCGCAAATATGACAGAACTTGAAAGGGAGATGATTTTGTCTAATAGAGCAACCAAAAAATGTGAAAAGGAATTCAAAGAGAAAATGAGATCCAAGAGAGAAAACAAAAATGCAAGTGCAAAGACTGGTTCTGCAGCAAATTCATCTCATCATCCATCATCTGCCAAGGTTCGTTCCTCGGCTAGAAATGCTGAGAGGACGGCTTCTAAGGGAGATGTTCTAAGTGAATTGCGCGCGAAAAGGATGAAGCAACAAACCGTAGACCCTCATGATAAATTGGGAAAGGCTTCAGGATCAGGCTCAAGTAGCAAGCAGAAACCTGGGGCCACGGCAAGTCCAAGTAGCTCTAGTCAAAGTGAGAGTGTTATTCGGTCTGACAGTGAAAGAGACTCGTCTGATGATGGTGGATTGGGTGACAGTGATGATGACAAGAACATTCATGAATCAAGGATGCCAAGTTTTGAGAACATAAGGGAAATCACCATTAGGAGATCAAAGCTCGTGAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGATGTTTTGTGAGAATTGGCATAGGAAAGTCAGAAAGTGGACCTGTTTACAGGCTCTGCACAGTGCAGAGAGTTGATGGAGGTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAGTATCTAGTCTGTGTGTGGGGAAGTGAGAACTCTGCTAAAAAGTTTCAGGTGGCTGTAGTTTCAGATTCTGCACCCTTGGAGAGAGAGTTCAGACAGTGGGTTAGAGAAGTTGAAAGAACTTGCAGCCAAATGCCTAGTAAGATGAGTGTGTTAGAGAAGAAGGAGGCCATAAAAAGAACAAGCGCTTATGTTTATTCAGCCGCCACGGTGAAGCAGATGCTAGAGGAGAAAAAATCAGCCCCATCTAGGCCACTGAACATTGCAGTGGAGAAGGATCGTATGAAGAATCTGTTGGAGGTTGCAAAGTGTAAGAATGATGAAGCAGAGGTGGATAGGATCTTGAGAAAGCTGGCGGATTTGGAAGCATGTCGTAAATCCCGGGAGACTGATACCAAGGCTTTGAGGCTGGCTGAGATGAACAGGAAGAACAAGGTTGAGAACTTCAAGAACTTGTCTGAGCATAAACTGTCGAATGCCAATTTGAAAGCTGGTGAGGAAGGCTATGATCCCTTTTCGAGGAGGTGGACAAGGTCGAGGAATTACTACGGCAAAGATACCGAAAAGAATGAAGAAAAAGGAGAAAAGGATGGTGAAGTTAGTAAGGAGGAAGAGAAGGAAGAAACAGGTGTTACAACAAAGGTTGGTGTTGAAGTCACAGAATTGGCATTGCAAGCAGCTGCTAATGAAGGGAAGTTGATTGATACCAATGCTCCTGTGGATGGTGGAACAGAATCAAACATGCTGCATGATTTCGACTTGCCTATCTCTTTGTCTGAACTCAAGAATTTTGGTGGACCACAGGGTCTCAAAAATGGATTTCTGGCAAGGAAACAAAAAATAGAAGCAACAGTTGGGTGCCGGGTTTCTGACAATGATGGGAGTAGGCATGCACTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGACTTCTGTGA 1974 0.4433 MADLENMLLEAAGRTSSPVRKRHKSRNSKSKREGGAAFSDGGSHSREEDSDEGANKKPQRYSSHVPLKKRLDVSRRSSNNSIRNEHGGGDLEDGAPDRDGGSSEESDVGSDLYKNEDDKQKLANMTELEREMILSNRATKKCEKEFKEKMRSKRENKNASAKTGSAANSSHHPSSAKVRSSARNAERTASKGDVLSELRAKRMKQQTVDPHDKLGKASGSGSSSKQKPGATASPSSSSQSESVIRSDSERDSSDDGGLGDSDDDKNIHESRMPSFENIREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGKSESGPVYRLCTVQRVDGGDPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEREFRQWVREVERTCSQMPSKMSVLEKKEAIKRTSAYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRMKNLLEVAKCKNDEAEVDRILRKLADLEACRKSRETDTKALRLAEMNRKNKVENFKNLSEHKLSNANLKAGEEGYDPFSRRWTRSRNYYGKDTEKNEEKGEKDGEVSKEEEKEETGVTTKVGVEVTELALQAAANEGKLIDTNAPVDGGTESNMLHDFDLPISLSELKNFGGPQGLKNGFLARKQKIEATVGCRVSDNDGSRHALTLTISDYKRRRGLL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02971 657 FunFam RNA polymerase-associated protein RTF1 273 405 - -
Viun1g02971 657 MobiDBLite consensus disorder prediction 1 271 - -
Viun1g02971 657 PANTHER UNCHARACTERIZED 235 656 - -
Viun1g02971 657 MobiDBLite consensus disorder prediction 159 183 - -
Viun1g02971 657 MobiDBLite consensus disorder prediction 217 243 - -
Viun1g02971 657 MobiDBLite consensus disorder prediction 42 58 - -
Viun1g02971 657 SUPERFAMILY Plus3-like 274 404 IPR036128 GO:0003677
Viun1g02971 657 Gene3D - 272 405 IPR036128 GO:0003677
Viun1g02971 657 MobiDBLite consensus disorder prediction 86 126 - -
Viun1g02971 657 MobiDBLite consensus disorder prediction 530 556 - -
Viun1g02971 657 Coils Coil 436 456 - -
Viun1g02971 657 Pfam Plus-3 domain 277 382 IPR004343 GO:0003677
Viun1g02971 657 SMART rtf1 272 384 IPR004343 GO:0003677
Viun1g02971 657 MobiDBLite consensus disorder prediction 133 158 - -
Viun1g02971 657 MobiDBLite consensus disorder prediction 184 211 - -
Viun1g02971 657 ProSiteProfiles Plus3 domain profile. 272 407 IPR004343 GO:0003677
Viun1g02971 657 MobiDBLite consensus disorder prediction 244 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02971 Viun-Chr1 38403379 38406278 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02971 K15178 - gmx:100793188 966.066