Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02958 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTTCCTTCAAGGCCTTCTCCACCTCCTTTTCCTGCTGCACAGACAGTGACACCCTTTTCATCAACCGGTTCCGTGGTTGGATCAGAGCCTCCTCCTTTTCGGCCCGCTCCTCCGGCTCCTTCGCAAGCCGCCACTCCATTTTCCTCAGCAGGACCTGCTGCAGCTAGACCAGGGGCACCCAGTTTTAGACCTGCACCACCAGGGAGGTTTAATGATCCTTCAGTGCCTCCTCCTCCTCAACCATCCAATGCCGCCGGCTGCTGGACCCTTTCAGCAGTTTCCGGCACCTCCCTTCCCCCGTCAATGCAGCCACGTGGACCTCCGCCGTCTATGGGACAACCATCCATTCAATCTTCTGCACCTAATCTAGCACCGCCGTTTCACACGTCTCTTCCAGCTCAGCCACAGATGCCTTTTGTCCCAATGGGCTCTCCCCCACCTCAAGGTGCTGCTCCTGCGCATATGGGTTCAAATGTTCCTCCGCGTACATTTCAGCCGTCTTTTCCTGGGTACCCGAGTAAGCAGACTGGTCCTGAAATGCAAGGTCCACCCATGCCTTCCGCTTTCCCTGCTAATCAAGGAAATTTTGGGACTGTTCCACCTGCTGGAGCTTCTCCTTTTTTGTCACATCAAGGAGGTTATGTTCCATCACCCCAAGTGGCTCCTCCGCCTGGTATCCAGTCAATGCAGCAGCAACCTGGATCTATGCCCCATATAGGTGGTGTTCAGGGCTTGGCAGAAGACTTCAATGCCCTCACAATGCAAACTCGTCCCGGAACAATGGATCCATTATTTGACCCCAAGGAACTTCCAAGGCCATTGGAAGGTGATATTGAGCCAAAGAATTTGGTTGACATGTATCCCATGAACTGCAATCCCCGGTTTCTACGACTCACGACCAGTGCCGTACCAAGCTCCCAGTCCTTGGCTTCTAGGTGGCACCTTCCACTTGGAGCAGTTGTATCTCCGCTTGCTGAACCTCCTGATGGGGAAGAGGTGCCTATAGTTAACTTTGCCCCAGCTAGTGTTGTTCGCTGCAGAAGATGTCGCACATACGTGAATCCTTATATGACATTTACGGAAGCAGGAAGAAAGTTCCGTTGCAACGTTTGTACCTTGCTTAACGATGTTCCTAGTGAATATTATGCACAACTAGATGCCACTGGAAAAAGAGTTGATATAAATCAACGGCCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAGTCGTGCTTGGATGAGCTTCCCGGCTTTCCACGTACGCAAATCGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCCTGACTCAACCACAGATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCGCTGCCAGATGATCTTCTTGTTAATTTGTCTGAATCAAGAAGTGTGGTAGAAGCCTTCCTAGATAGTTTGCCAACCATGTTCCATGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACTCACTCCCATCTCTTGGTGTTGGCCGTTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGACTGACAAAGAACATGGACTGAGACTGCCAGAAGATCCATTTTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAGCAAATGTTTATGTATTCAGTGATAAATACACAGATGTTGCCTCCTTGGGAACTCTGGCAAAATATACTGCTGGTCAAGTGTATTTCTATCCAGCTTTCCAATCAGCTATTCATGGGGATAAATTGAGACATGAATTAAAGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTACGGTCCACTGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCTATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGCGGGGAAAGACGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACGGAGTTGGCAGATATCTATCGTTTGGCTGATACTGGTGCTATTGTATCGCTGTTAAGTAGGCTAGCAATTGAGAAAACATTATCCCAAAAACTGGAAGATGCACGGACTGCTGTTCAACTAAGAATTGTGAAATCCCTTAGGGAATATCGGAATCTTTATTCTGTGCAACATCGCTTGGCCAACAGAATGATATATCCCGAGTCTCTAAAGTTCCTAATTTTATATGGATTAGCCCTGTGTAGATCAACAGCTCTACGTGGAGGATATGGTGATGTTCCACTGGATGAACGATGTGCGGCAGGACACATAATGATGACTGTATCAATAAAAGTACTGTTGAAACTTCTCTATCCTAGTTTGATTCGACTTGATGAATATCTTATGAAGGCATCTGTGCAGGCTGATGACTTAAAAAGTGTTGAGAGAAGGTTACCTTTGACAGGGGAGAGCTTGGATTCTAGGGGCCTTTATTTATATGATGACGGCTTCCGGTTCATTATATGGTTTGGTAGGGTGATTTCACCGGACATAGCCAAAAATTTACTTGGGCCAGACTTTGCGGCAGAATTATCGAAGACTACACTCAGTGAGCATGACAATGAAATGTCAAGGAGATTGATGAAGTTACTTGAGAAGTTGAGAAATACAGATCGTGCTTATTACCAGTTATGCCACCTTGTGAGGCAAGGTGAACAGCCCAAAGAAGGATTCCTCTTTCTTTCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTACGCTGAATGGATGTTACAAATATCCCGGCAAGTGCAGCAATCATAA 3072 0.4574 MGTENPGRPTFPSRPSPPPFPAAQTVTPFSSTGSVVGSEPPPFRPAPPAPSQAATPFSSAGPAAARPGAPSFRPAPPGRFNDPSVPPPPQPSNAAGCWTLSAVSGTSLPPSMQPRGPPPSMGQPSIQSSAPNLAPPFHTSLPAQPQMPFVPMGSPPPQGAAPAHMGSNVPPRTFQPSFPGYPSKQTGPEMQGPPMPSAFPANQGNFGTVPPAGASPFLSHQGGYVPSPQVAPPPGIQSMQQQPGSMPHIGGVQGLAEDFNALTMQTRPGTMDPLFDPKELPRPLEGDIEPKNLVDMYPMNCNPRFLRLTTSAVPSSQSLASRWHLPLGAVVSPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVEAFLDSLPTMFHDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYVFSDKYTDVASLGTLAKYTAGQVYFYPAFQSAIHGDKLRHELKRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTELADIYRLADTGAIVSLLSRLAIEKTLSQKLEDARTAVQLRIVKSLREYRNLYSVQHRLANRMIYPESLKFLILYGLALCRSTALRGGYGDVPLDERCAAGHIMMTVSIKVLLKLLYPSLIRLDEYLMKASVQADDLKSVERRLPLTGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKNLLGPDFAAELSKTTLSEHDNEMSRRLMKLLEKLRNTDRAYYQLCHLVRQGEQPKEGFLFLSNLVEDQMGGNSGYAEWMLQISRQVQQS 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02958 1023 PANTHER SEC24-RELATED PROTEIN 124 1020 - -
Viun1g02958 1023 Pfam Sec23/Sec24 zinc finger 354 391 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Viun1g02958 1023 MobiDBLite consensus disorder prediction 170 184 - -
Viun1g02958 1023 SUPERFAMILY vWA-like 428 667 IPR036465 -
Viun1g02958 1023 Gene3D - 299 412 - -
Viun1g02958 1023 Gene3D Severin 873 1001 IPR029006 -
Viun1g02958 1023 MobiDBLite consensus disorder prediction 94 110 - -
Viun1g02958 1023 MobiDBLite consensus disorder prediction 10 24 - -
Viun1g02958 1023 MobiDBLite consensus disorder prediction 219 251 - -
Viun1g02958 1023 Pfam Sec23/Sec24 trunk domain 428 664 IPR006896 GO:0006886|GO:0006888|GO:0030127
Viun1g02958 1023 FunFam protein transport protein Sec24D isoform X1 430 667 - -
Viun1g02958 1023 SUPERFAMILY Helical domain of Sec23/24 765 872 IPR036175 GO:0006886|GO:0006888|GO:0030127
Viun1g02958 1023 Gene3D Sec23/Sec24 helical domain 754 1020 - -
Viun1g02958 1023 MobiDBLite consensus disorder prediction 1 193 - -
Viun1g02958 1023 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 884 1022 IPR036180 -
Viun1g02958 1023 SUPERFAMILY Zn-finger domain of Sec23/24 344 427 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Viun1g02958 1023 Gene3D von Willebrand factor, type A domain 430 667 IPR036465 -
Viun1g02958 1023 MobiDBLite consensus disorder prediction 69 93 - -
Viun1g02958 1023 CDD Sec24-like 428 669 IPR041742 GO:0006886|GO:0006888|GO:0030127
Viun1g02958 1023 SUPERFAMILY beta-sandwich domain of Sec23/24 175 763 - -
Viun1g02958 1023 Gene3D - 301 753 - -
Viun1g02958 1023 Pfam Sec23/Sec24 helical domain 765 867 IPR006900 GO:0006886|GO:0006888|GO:0030127
Viun1g02958 1023 Pfam Sec23/Sec24 beta-sandwich domain 670 754 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02958 Viun-Chr1 38295257 38306425 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02958 K14007 - gmx:100791083 1741.86