Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02935 ATGAAGCTCGCAGCCTCGCTTCTACTATTCACTTTTGCTTTGGTGTCAACCACCATCACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCAGGTATTAAAGTGAATGGATTCCCCTGCAAAGATGGTGCGGTAAATGCCTCTGATTTCTTCTCAGACATACTAGCGAAACCAGGTGCCACAAACAACACCTATGGGTCGTTGGTGACTGGAGCCAATGTTCAGAAAATCCCAGGACTCAACACCCTTGGTGTATCTATGTCACGAGTTGACTATGCTCCCGGTGGCATCAACCCTCCTCACACGCACCCACGCGCCACCGAGATTGTGTTCGTGCTGGAAGGAACACTCGATGTGGGATTCATAACCACAGCCAATGTGCTCATATCAAAGACCATCACCAAGGGTGAGATTTTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCAGCCCTTGCAGCATTCAACAGTCAATTACCTGGCACACAGTCCATTGCTCTGACCTTGTTTACAGCCACACCACCTGTTCCAGACAATGTCTTGACCCAGGCCTTTCAGATTGGTACCAAGGAGGTTGAGAAAATCAAGACCAGGCTTGCACCTAAGAAATAA 654 0.4817 MKLAASLLLFTFALVSTTITASDPDPLQDLCVADLASGIKVNGFPCKDGAVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSMSRVDYAPGGINPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTITKGEIFVFPKGLVHFQKNNAKEPASALAAFNSQLPGTQSIALTLFTATPPVPDNVLTQAFQIGTKEVEKIKTRLAPKK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02935 217 Pfam Cupin 61 206 IPR006045 -
Viun1g02935 217 CDD cupin_OxOx 23 213 IPR001929 GO:0030145
Viun1g02935 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Viun1g02935 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 211 - -
Viun1g02935 217 SUPERFAMILY RmlC-like cupins 23 212 IPR011051 -
Viun1g02935 217 SMART Cupin_1_3 58 207 IPR006045 -
Viun1g02935 217 Gene3D Jelly Rolls 22 215 IPR014710 -
Viun1g02935 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Viun1g02935 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Viun1g02935 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Viun1g02935 217 FunFam germin-like protein subfamily 2 member 1 22 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02935 Viun-Chr1 38131014 38132547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02935 8 217 Miscellaneous Gene Families AT3G05930 57.075 7.44e-85 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02935 - - gmx:100302722 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02935 1 38131014 38132547 Viun7g01925 7 24355573 24357114 PCT