Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02923 ATGAATCCTCGTTTCTCCAATTATACAGTTGAACAATTTAAGCGCCTCCTTGGAGCCAAACAAACGCCTAAGGCCGTACTCGGGAGTGTACCTGTTATTTCTCATCCAAAATCATTGAAGTTGCCGGTGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATATTTCTCTCTCTGTCAATGACCTTCTCGCATGCTGTGGCTTTCTGTGTGGATCTGGGTGTAATGGGGGATATCCCTTATCTGCATGGCGATACTTATCCAACCACGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAACTGGCTGTTCTCATCCTGGATGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAAAAGTGTGTAAGTGGGAACCAGCTGTGGAAGAAGTCAAAGCACTATAGTGTCAGTACCTACAAGGTCAAATCTAATCCCCATGATATCATGGCAGAAGTGTACAAAAATGGGCCAGTTGAGGTCGCATTTACTGTTTATGAGGATTTTGCTCACTACAAGTCAGGAGTTTACAAACACGTCACAGGTTATGTACTAGGCGGTCATGCAGTGAAGCTAATTGGGTGGGGAACAACTGATGATGGCGATGACTATTGGCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAAATCCGAAGGGGGACAAATGAATGCGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCTTCTACCAAAAACCTCGTAAGAGAGGTGACTGATATGGATGATGGCGTTGCTGTTTCATTCTGA 894 0.443 MNPRFSNYTVEQFKRLLGAKQTPKAVLGSVPVISHPKSLKLPVNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCNGGYPLSAWRYLSNHGVVTEECDPYFDQTGCSHPGCEPAYRTPKCVKKCVSGNQLWKKSKHYSVSTYKVKSNPHDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYVLGGHAVKLIGWGTTDDGDDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNLVREVTDMDDGVAVSF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02923 297 Gene3D Cysteine proteinases 1 283 - -
Viun1g02923 297 SUPERFAMILY Cysteine proteinases 3 277 IPR038765 -
Viun1g02923 297 SMART pept_c1 41 276 IPR000668 GO:0006508|GO:0008234
Viun1g02923 297 CDD Peptidase_C1A_CathepsinB 42 275 - -
Viun1g02923 297 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 222 232 IPR025660 -
Viun1g02923 297 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 2 269 IPR013128 GO:0008234
Viun1g02923 297 PRINTS Papain cysteine protease (C1) family signature 63 78 IPR000668 GO:0006508|GO:0008234
Viun1g02923 297 PRINTS Papain cysteine protease (C1) family signature 224 234 IPR000668 GO:0006508|GO:0008234
Viun1g02923 297 PRINTS Papain cysteine protease (C1) family signature 240 246 IPR000668 GO:0006508|GO:0008234
Viun1g02923 297 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 63 74 IPR000169 -
Viun1g02923 297 FunFam cathepsin B-like protease 2 1 282 - -
Viun1g02923 297 Pfam Papain family cysteine protease 41 275 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02923 Viun-Chr1 38036791 38043081 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02923 K01363 - gmx:100778103 575.859