Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02916 ATGCTCTGCCGTCCTAGCTACTCTCTCTTTCTGTTTCCTCACACTCTCCTTGGAAGCGATAAAATGGGTTGGCATGGAGGTCTCAAAAGCATGGTCTTGATGGGTGCTGTTATGGTGGCCATGGTGGTTGTTCAAAATGTACAGTGCGAGGAAGGTGTTGTTAATGTTCATGACACAACACGCAATTTAGTTCAGAATGGTGGCTTCGTTCGACGAAGCGGCACCAACTTTGTTCTGAACAACAAGCGTTTCTACTTCAACGGATTCAACGCTTACTGGTTAATGTTAATGGCATCTGACCCATCAACAAGGCCAAAGGTCACTTCCGTTTTGCAACAAGCTTCCAGCCATGGCTTAACCGTTGCCAGAACCTGGGCTTTCAACGACGGAGCTTACGGAGCCCTTCAGGTTTCTCCTGGTTCATACGACGAGAAAGTATTCAGGGGATTGGACTTTGTGATATCTGAAGCGGGAAAAAATGGAGTACGATTGATACTGAGCTTGGTGAACAACTGGAAGGATTTTGGTGGGAAAAATCAGTATGTGGAATGGGTGAAGGAGCATGGTGAGTACGTGAACAGTGAAGATGATTTCTTCACGCATCCTTTAGCCAGACAACACTTCAAAAACCATATCAAGGCCGTGCTGACAAGAAAAAACACAGTAAGTGGGGTGGCATATAAGGACGATCCTGCCATATTTGCATGGGAACTTATGAATGAACCCCGTTGCCAACACGACAACACCGGAAAAGTTATTCAGGAATGGGTGATTGAGATGGGTGCATACGTCAAATCCATCGATAGCAATCATTTGCTTGAAATAGGACTGGAAGGGTTCTACGGTGAAGATAAAAAACAAATCAATCCTGGGTACCAACTTATTGGCACTGATTTCATTTCTAACAACCTAGTTCATCATGTCGATTTTGCTACCATGCATCTCTACCCTGAACAATGGATGCCCGGTTCAAATGAAGCTGCTCAGGTTGCATTTGTTGACAAGTGGCTAGAAACACACATTGAGTATTCGAAAAATGTTCTTGGGAAACCTGTTGTTGTTGGTGAATTTGGGAAGTCTTGTAGGTCATACAGTGTGGCTGAAAGGGACAGTTACTTGAGCAAAATGTATAATGCAATATACAGTAATGCTTTGAGTGGGGGACCCTGTGCCGGAGGGCTTTTTTGGCAGCTCATGGCTCAGGGAATGGACAATTTCTATGATGGTTATGAAGTTGTCTTCCAGAACAGTCCTTCAACTACCAGAATTATTGATCAACAATCCCACAAAATGTCAAGTATTTCTTAG 1308 0.4396 MLCRPSYSLFLFPHTLLGSDKMGWHGGLKSMVLMGAVMVAMVVVQNVQCEEGVVNVHDTTRNLVQNGGFVRRSGTNFVLNNKRFYFNGFNAYWLMLMASDPSTRPKVTSVLQQASSHGLTVARTWAFNDGAYGALQVSPGSYDEKVFRGLDFVISEAGKNGVRLILSLVNNWKDFGGKNQYVEWVKEHGEYVNSEDDFFTHPLARQHFKNHIKAVLTRKNTVSGVAYKDDPAIFAWELMNEPRCQHDNTGKVIQEWVIEMGAYVKSIDSNHLLEIGLEGFYGEDKKQINPGYQLIGTDFISNNLVHHVDFATMHLYPEQWMPGSNEAAQVAFVDKWLETHIEYSKNVLGKPVVVGEFGKSCRSYSVAERDSYLSKMYNAIYSNALSGGPCAGGLFWQLMAQGMDNFYDGYEVVFQNSPSTTRIIDQQSHKMSSIS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02916 435 Pfam Cellulase (glycosyl hydrolase family 5) 102 379 IPR001547 GO:0004553|GO:0071704
Viun1g02916 435 PANTHER - 32 434 IPR045053 GO:0004553
Viun1g02916 435 FunFam Mannan endo-1,4-beta-mannosidase 6 66 435 - -
Viun1g02916 435 SUPERFAMILY (Trans)glycosidases 69 425 IPR017853 -
Viun1g02916 435 Gene3D Glycosidases 65 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02916 Viun-Chr1 38003692 38006798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02916 31 434 Glycoside Hydrolase AT5G66460 51.834 4.99e-150 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02916 K19355 - gmx:100787923 714.146